PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G077500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 360aa    MW: 37295.2 Da    PI: 4.8565
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G077500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1208.6e-383892761
              zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        +cprCds ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Brast01G077500.1.p 38 SCPRCDSPNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 92
                        7***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-321891IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8263791IPR003851Zinc finger, Dof-type
PfamPF027012.8E-313891IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLSSHSHEAM LPYVPRPPPS LLVDRRAYKT GAEVVAPSCP RCDSPNTKFC YYNNYSLTQP  60
RYFCKGCRRY WTKGGSLRNV PVGGGCRKNR RGKSSSSSSM RPSSASDSSF PGAGRDAGPF  120
GSHRFGSAPG SSLRPDMVLE GMVGNHNPAD PGHAAAADAS TIDLAMLYSK FLNNQQPGNK  180
NNCVTPESAG GRVADDGFDT FSASSDVLSP GVLAAPGGQF DLSPGQDGFG EWSGPLSSGA  240
AGPASAASTA ATTTTSAMML CADASVQAAL GELSFAMDQS CFDALGLPMA AGDGAASSVG  300
DDLSSWCSIV PSLSTWEEPK YDSLDSFPDD ALSLHDGMLA AADHDWSADC HGLEALYMP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G077500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269752e-91KJ726975.1 Zea mays clone pUT3676 C2C2-DOF transcription factor (DOF19) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564686.20.0uncharacterized protein LOC100821289
TrEMBLI1HTQ30.0I1HTQ3_BRADI; Uncharacterized protein
STRINGBRADI2G55980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-34Dof family protein