PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G075700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 275aa    MW: 28999.4 Da    PI: 6.42
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G075700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.4e-214897255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Brast01G075700.2.p 48 RYRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFDTAEAAARAYDEAALRFRG 97
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3348106IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2348106IPR016177DNA-binding domain
PfamPF008472.1E-144897IPR001471AP2/ERF domain
PROSITE profilePS5103225.71248105IPR001471AP2/ERF domain
SMARTSM003801.0E-3748111IPR001471AP2/ERF domain
PRINTSPR003677.8E-124960IPR001471AP2/ERF domain
CDDcd000182.00E-1556107No hitNo description
PRINTSPR003677.8E-127187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MHAWGVEYSF TGETEREGSD QSPDTQSATM EGEQHHQPQP NAEAPRRRYR GVRQRPWGKW  60
AAEIRDPHKA QRVWLGTFDT AEAAARAYDE AALRFRGSRA KLNFPEDARL LPASTAAAVN  120
PPAQAPVAAA AAAASVSAAA MMYPGAAQTS DAYLRYQMLL QRSGVAINNQ GALVPLYGGG  180
GGGMASSYGG GATSGGLGSY YSFPSSSVSV ATVPSSSSAS SASGGQYYSS SHDSHHHYQQ  240
QQGEAAADWN WENALDYPGT TASWSDSTPP PHNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2349105663ATERF1
3gcc_A9e-2349105663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G075700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644304e-85FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753801.11e-84ethylene-responsive transcription factor ABR1 isoform X2
TrEMBLA0A0Q3GK226e-79A0A0Q3GK22_BRADI; Uncharacterized protein
STRINGBRADI2G56140.13e-76(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-14ethylene response factor 110