PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G075700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 370aa    MW: 38179.4 Da    PI: 5.5441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G075700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20143192255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Brast01G075700.1.p 143 RYRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFDTAEAAARAYDEAALRFRG 192
                         7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-37143206IPR001471AP2/ERF domain
PROSITE profilePS5103225.712143200IPR001471AP2/ERF domain
PfamPF008473.3E-14143192IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22143201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-33143201IPR001471AP2/ERF domain
PRINTSPR003671.3E-11144155IPR001471AP2/ERF domain
CDDcd000181.48E-15151202No hitNo description
PRINTSPR003671.3E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MCFELADPRG NSGGSSAKSG GDNSGASPAA MAMASPEELM SGYYQAQEMS TMVSALSRVV  60
ASDDPWAAEA SASASAWAAP ASGAGRAMHG GGYYGQEQGS FLFPGAPSQE FAGSDQSPDT  120
QSATMEGEQH HQPQPNAEAP RRRYRGVRQR PWGKWAAEIR DPHKAQRVWL GTFDTAEAAA  180
RAYDEAALRF RGSRAKLNFP EDARLLPAST AAAVNPPAQA PVAAAAAAAS VSAAAMMYPG  240
AAQTSDAYLR YQMLLQRSGV AINNQGALVP LYGGGGGGMA SSYGGGATSG GLGSYYSFPS  300
SSVSVATVPS SSSASSASGG QYYSSSHDSH HHYQQQQGEA AADWNWENAL DYPGTTASWS  360
DSTPPPHNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22144200663ATERF1
3gcc_A4e-22144200663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G075700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644306e-85FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753801.11e-130ethylene-responsive transcription factor ABR1 isoform X2
TrEMBLA0A0Q3GK221e-125A0A0Q3GK22_BRADI; Uncharacterized protein
STRINGLPERR01G33110.12e-84(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-14ethylene response factor 110