PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G062700.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 712aa MW: 82210.5 Da PI: 8.9259

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G062700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.8e-09	688	710	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr++++ +C+y ++CkF+Hg Brast01G062700.2.p 688 KLCRYYQQRLWCPYEENCKFSHG 710 79****99**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	3.1E-7	104	147	IPR003034	SAP domain
SuperFamily	SSF68906	1.15E-5	105	147	No hit	No description
Pfam	PF02037	8.9E-7	112	146	IPR003034	SAP domain
SuperFamily	SSF90229	9.94E-6	683	710	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.995	684	711	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-6	686	710	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.8E-6	688	710	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MAAAAAARAD LPPAEDDPVE GEELEEEEEV ESDDGSEDAS LAHLCDEGSD EDPSFDPAAD 60 RDLEGEAKLW PGMARLSISA RKERKGSMAP KMGKEDSDLL VMVDKLMRDG QLEKLKVYEC 120 KAYLRMHKLR LSGKKEVLLC RIREHIEVKN NGAVKYPVSS FVLNCKGDAC KGDVVIFEQN 180 IYKRKKGAPR GRGDRGHLCG QRTNAGRIIK ESYGTAKQQH TFTIEILWSE GYKPWPPLHP 240 LLIKGRNLYK DKTMRQPWPD EQERSRVLQE KHARGCIARK SRDVRIHDKE IEKMRRFNRS 300 DEGRIPSLQH GEPGNTMQHH ISSKQNPANH LVDQQIPCWQ HCNEVLPQEG GTRTSRPESI 360 KHQVPSVQQG EPEKTRQQHI LSKPAPVEQI FKHPQEQNNH RPTPAQQMFK HPQEHGNGQQ 420 HNPQQGTTKS FNILGQAPWI HLGGPGNARQ LQKSPKPTPV QQIMNQAQPP NYQHRNEVLS 480 EEAAKKTYRV DSVDHQNGTN HNTESVKAPC LQHGGSGNAW QQQKSSKPTP THQIKNLPQS 540 QIHQYQSGVL RQEVTKRTYR VESIAHQTNT YRNTEYHEPS FQPQGTTQQQ HKQADHQRLQ 600 PLGPRNQDFS SRNQGGDYHR RRQMTQEQHH TEQRHHWNQY GHRQMARDQY ELQQIHHQNQ 660 HDSWSMNQNH FPHDYQNYQY AQQFPRLKLC RYYQQRLWCP YEENCKFSHG S*

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MAAAAAARAD LPPAEDDPVE GEELEEEEEV ESDDGSEDAS LAHLCDEGSD EDPSFDPAAD  60
RDLEGEAKLW PGMARLSISA RKERKGSMAP KMGKEDSDLL VMVDKLMRDG QLEKLKVYEC  120
KAYLRMHKLR LSGKKEVLLC RIREHIEVKN NGAVKYPVSS FVLNCKGDAC KGDVVIFEQN  180
IYKRKKGAPR GRGDRGHLCG QRTNAGRIIK ESYGTAKQQH TFTIEILWSE GYKPWPPLHP  240
LLIKGRNLYK DKTMRQPWPD EQERSRVLQE KHARGCIARK SRDVRIHDKE IEKMRRFNRS  300
DEGRIPSLQH GEPGNTMQHH ISSKQNPANH LVDQQIPCWQ HCNEVLPQEG GTRTSRPESI  360
KHQVPSVQQG EPEKTRQQHI LSKPAPVEQI FKHPQEQNNH RPTPAQQMFK HPQEHGNGQQ  420
HNPQQGTTKS FNILGQAPWI HLGGPGNARQ LQKSPKPTPV QQIMNQAQPP NYQHRNEVLS  480
EEAAKKTYRV DSVDHQNGTN HNTESVKAPC LQHGGSGNAW QQQKSSKPTP THQIKNLPQS  540
QIHQYQSGVL RQEVTKRTYR VESIAHQTNT YRNTEYHEPS FQPQGTTQQQ HKQADHQRLQ  600
PLGPRNQDFS SRNQGGDYHR RRQMTQEQHH TEQRHHWNQY GHRQMARDQY ELQQIHHQNQ  660
HDSWSMNQNH FPHDYQNYQY AQQFPRLKLC RYYQQRLWCP YEENCKFSHG S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G062700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567347.1	0.0	zinc finger CCCH domain-containing protein 62
Swissprot	Q338N2	0.0	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	A0A2K2DGD9	0.0	A0A2K2DGD9_BRADI; Uncharacterized protein
STRING	BRADI2G57335.1	0.0	(Brachypodium distachyon)

Link Out ? help Back to Top
Phytozome	Brast01G062700.2.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]