PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G040100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8724.93 Da    PI: 10.8724
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G040100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.2e-261160251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+ + rqv fskRr+g++KKA+EL  LCdaeva+++fs+ g+lyeyss
  Brast01G040100.2.p 11 RIEDRTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGRLYEYSS 60
                        8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-32261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.114262IPR002100Transcription factor, MADS-box
CDDcd002654.76E-33362No hitNo description
PRINTSPR004042.0E-27424IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-27472IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MARRGRVELR RIEDRTSRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGRLYEYSS  60
SSRKFDFDNY SQSGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-17461360Myocyte-specific enhancer factor 2B
1tqe_Q3e-17461360Myocyte-specific enhancer factor 2B
1tqe_R3e-17461360Myocyte-specific enhancer factor 2B
1tqe_S3e-17461360Myocyte-specific enhancer factor 2B
6c9l_A3e-17461360Myocyte-specific enhancer factor 2B
6c9l_B3e-17461360Myocyte-specific enhancer factor 2B
6c9l_C3e-17461360Myocyte-specific enhancer factor 2B
6c9l_D3e-17461360Myocyte-specific enhancer factor 2B
6c9l_E3e-17461360Myocyte-specific enhancer factor 2B
6c9l_F3e-17461360Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G040100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693341e-85KF469334.1 Brachypodium distachyon MADS-box transcription factor 40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564959.12e-36MADS-box transcription factor 51 isoform X2
SwissprotQ9XJ615e-36MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLT1NJM81e-35T1NJM8_TRIUA; Uncharacterized protein
STRINGTRIUR3_30872-P12e-36(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-27AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]