PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G040100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

M-type_MADS

Protein Properties

Length: 97aa MW: 11009.7 Da PI: 9.8376

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G040100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.3	6.3e-26	11	60	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr+g++KKA+EL LCdaeva+++fs+ g+lyeyss Brast01G040100.1.p 11 RIEDRTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGRLYEYSS 60 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-32	2	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.114	2	62	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.02E-34	3	62	No hit	No description
PRINTS	PR00404	3.0E-27	4	24	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-27	4	72	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-25	11	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-27	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-27	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MARRGRVELR RIEDRTSRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGRLYEYSS 60 SSRINFEMQY QIYMNFASCG GDGAYGDLKN IINVIC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	1e-16	4	73	2	71	Myocyte-specific enhancer factor 2B
1n6j_B	1e-16	4	73	2	71	Myocyte-specific enhancer factor 2B
1tqe_P	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
1tqe_R	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
1tqe_S	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
3mu6_A	6e-17	4	73	2	71	Myocyte-specific enhancer factor 2A
3mu6_B	6e-17	4	73	2	71	Myocyte-specific enhancer factor 2A
3mu6_C	6e-17	4	73	2	71	Myocyte-specific enhancer factor 2A
3mu6_D	6e-17	4	73	2	71	Myocyte-specific enhancer factor 2A
6c9l_A	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
6c9l_B	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
6c9l_C	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
6c9l_D	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
6c9l_E	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
6c9l_F	8e-17	4	73	3	72	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G040100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469334	1e-85	KF469334.1 Brachypodium distachyon MADS-box transcription factor 40 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181348.1	1e-38	MADS-box transcription factor 51-like
Swissprot	Q9XJ61	6e-35	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A287MDG7	4e-39	A0A287MDG7_HORVV; Uncharacterized protein
STRING	Pavir.J02739.1.p	6e-38	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	1e-27	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Brast01G040100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]