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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Brast01G037200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
Trihelix |
Protein Properties |
Length: 325aa MW: 35209.2 Da PI: 5.2054 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Brast01G037200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 64.9 | 1.7e-20 | 25 | 100 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73
rWt++e+l+Li+a+r +e+r + g+ +W+ vs ++r++g+er+p qC+++w nl+++ kki ++ekk++
Brast01G037200.1.p 25 RWTRHETLVLIQAKRATEQRAAAaagGQPVRLKWAVVSGYCRRHGVERGPMQCRKRWGNLSWDLKKILAWEKKKAT 100
8********************98443467899****************************************9743 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MSANGDSLSP AAMAGATTPR SRLPRWTRHE TLVLIQAKRA TEQRAAAAAG GQPVRLKWAV 60 VSGYCRRHGV ERGPMQCRKR WGNLSWDLKK ILAWEKKKAT KTMMEQEEEE EEGKKEEGQD 120 QDQDGPSSSR PSFWEMRGEQ RRARQLPSSF DREVYDALVG AAAAVKLPPA ESGEEMELDE 180 DDDDDDDDGH QQPMPIPARM PPPPVLVMPI SARMYVPPAS SQHECSDPAT ESAKKPGSDK 240 NSTSQQDSEA TFGAGVGGEG TATAAGTSVI GRQVTEALER GNRVLAEQLE AQRASSAADR 300 EHRAALLAAV TRLADAVSRI ADKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 6e-69 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |