PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g27467.7.p
Common NameBRADI_5g27467
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 347aa    MW: 38238.5 Da    PI: 6.6402
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g27467.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51151631128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................kvkaeekewyfFskrdkkyatgkrknr 76 
                       +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++                 + ++++ ewyfFs +d+ky++g+r+nr
  Bradi5g27467.7.p  15 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQErcgrqygagsgheedsfRSSSSSAEWYFFSFKDRKYPSGTRTNR 106
                       69****************************.99**************95589999999998888665555677******************** PP

               NAM  77 atksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       at++g+Wkatg+dk+vl+      +g+++g++ktLvfy+grap+g+kt+W+mheyrl
  Bradi5g27467.7.p 107 ATAAGFWKATGRDKPVLRGghghgRGAVIGMRKTLVFYRGRAPNGRKTEWIMHEYRL 163
                       *****************98877777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5513184IPR003441NAC domain
PROSITE profilePS5100556.18215184IPR003441NAC domain
PfamPF023651.5E-2716163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEHLQQQQDD QSCCVPPGFR FHPTEEELVG YYLARKVASQ KIDLDIIQEV DLYRIEPWDL  60
QERCGRQYGA GSGHEEDSFR SSSSSAEWYF FSFKDRKYPS GTRTNRATAA GFWKATGRDK  120
PVLRGGHGHG RGAVIGMRKT LVFYRGRAPN GRKTEWIMHE YRLQSSEHAP TPEEGWVVCR  180
AFHKPLPNMH HHRPMPFVFP GADHYAAAAG GPPPAGYYIN DIDARLNGHG GDLLNYLHPA  240
PVSGGGGGGF VFPGNGSVHG QMIVSEDLQV ESKKHVNIFS SIPQLIESPV TATIDDDDQA  300
GAGQQAAGGI DWNFLDSLLS STSSASQLIH DSSSQSQLMM HLQQQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4841843168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g27467.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934260.0JQ693426.1 Brachypodium distachyon SWN5 (SWN5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240665.10.0protein SOMBRERO isoform X1
RefseqXP_010240666.10.0protein SOMBRERO isoform X2
SwissprotO655087e-82NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A0Q3EGN20.0A0A0Q3EGN2_BRADI; Uncharacterized protein
TrEMBLA0A0Q3HBL10.0A0A0Q3HBL1_BRADI; Uncharacterized protein
STRINGBRADI5G27467.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.12e-74NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Valdivia ER, et al.
    Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon.
    J. Exp. Bot., 2013. 64(5): p. 1333-43
    [PMID:23386682]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]