PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25760.1.p
Common NameBRADI_5g25760, LOC100841804
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 704aa    MW: 79239.5 Da    PI: 5.778
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07111134327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +f++ G C  Gd+C+F Hgp
  Bradi5g25760.1.p 111 MVPCYYFQK-GNCVKGDKCPFYHGP 134
                       789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7092756IPR000571Zinc finger, CCCH-type
SMARTSM003560.00512855IPR000571Zinc finger, CCCH-type
PfamPF156631.8E-122984No hitNo description
PROSITE profilePS5010311.5075884IPR000571Zinc finger, CCCH-type
SMARTSM003560.26083IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986108135IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6108134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4113134IPR000571Zinc finger, CCCH-type
PfamPF146080.091113133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MEEDGASAAE AAVPAATKPL TPEEEALRRN TDCVYFLASP LTCKKGNECD FRHSEIARMN  60
PRDCWYWLNG NCLNPKCSFR HPPIDGMFGA PSPGIPAVSS HYAAYNLGKQ MVPCYYFQKG  120
NCVKGDKCPF YHGPQSTGNN PPEQVAKVSS FPLEQPQTQK NDLLGIKESA RTNNLIQRGG  180
PIIDDRSKMA VDRPTANSAK TPADAIPAKL ASSALKSLPK SEKLQSSMPA AKRSFRTSSG  240
EDHPECYHNN LIESDPVQDW NEDYRPPADD DLPQNSREAD ELPGESSPGF DVLVDNDGDA  300
AAYLHDEEDF GRDMYPVEDY EYAPADFEIP PHHERELFNR MGEQGPVGQI YDGYERKRRR  360
TSSERNMDRP SHSERRSRHR DIGHVEIDGS DLRHRLRRRK INGSSGTSPE RSGEHRRRDE  420
RYRERAYDGH HTHRDRHRSP RGSTLSSRLQ GRIKLPGRSP DRVVTSSEKE QDRRPLRERL  480
SPVKHMDVQG VRHREAGQHQ ERTLRRSSEL PSSARNADGQ HLRRNVTESL NFGRKANGRV  540
ESEASLDFEG PKPLSIILQK KRQATCGNGS SAHNGKQDKS AKVSHRQPES IVETEKEGYD  600
NIVSSEEYKS RSGDEYKEES RIPAEGHGQS SSHGDKPETE DIIEVDPVVN QEADNYEQGE  660
GESDYDAAEG QEYKSEDENA YQNDEDEFED DDDFARKVGV VFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355359RKRRR
2355360RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580797.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLI1J3830.0I1J383_BRADI; Uncharacterized protein
STRINGBRADI5G25760.10.0(Brachypodium distachyon)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]