PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24670.1.p
Common NameBRADI_5g24670, LOC100841788
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 421aa    MW: 45811.3 Da    PI: 7.8376
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.4e-40185263178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Bradi5g24670.1.p 185 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 263
                       6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.8E-34180248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.222183261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-37184264IPR004333Transcription factor, SBP-box
PfamPF031107.5E-31186260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMNLPASASS CDDFIGVYGA PSNNPSPNNP PPQQPASSLF PLMDHQEQHR DHHHLGYNLE  60
PNSLALLPPS NAHHHHGATI AAHSAHDILQ FYPTGATHHH YLAAAAAGNN PYSGHFSGAG  120
STFQSSYYGQ QQQGPEYSYF PALVSSAEEN MASFAATQLG LNLGYRTYFP PRGHGGYAYG  180
HHPPRCQAEG CKADLSGAKR YHRRHKVCEH HSKAPVVVTA GGLHQRFCQQ CSRFHLLDEF  240
DDAKKSCRKR LADHNRRRRK SKPSDADAAD KKRSTQASKT ASTKGKAAGS SSKSTGTGDG  300
MDIQVVGVAD LSKDQDETMG LGEVVKEMQV DPKGKASMQQ QQGHHGLHQQ QQSHHGFHFP  360
SSSAGSCFPH QSQAVSSSDN TSNIAQVQEP SLGFHQQHHH QQHNNILQLG QAMFDLDFDH  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261862601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255272RRRRKSKPSDADAADKKR
2256261RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g24670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240547.10.0squamosa promoter-binding-like protein 8
SwissprotQ01KM71e-170SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLI1J2U90.0I1J2U9_BRADI; Uncharacterized protein
STRINGBRADI5G24670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-39squamosa promoter binding protein-like 8