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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g22984.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22146.5 Da PI: 12.38 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 1e-07 | 48 | 75 | 18 | 47 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47 ++G + Wk+I +++ ++t q++s+ qky Bradi5g22984.1.p 48 RFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 75 56755.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 5.5E-6 | 48 | 75 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 6.2E-8 | 48 | 78 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 8.97E-8 | 48 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00683 | 52 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
TANRLLTLSL RLVYIRVGAH RPMNRERPAS SRSKEAWIRR QRGRRGRRFG RDWKKIEEHV 60 RTKTTVQIRS HAQKYFLKVQ KLGLAAGLPP HHPIRSLGVA QSTAAASVAV PGPMMVLHGQ 120 PQECPPGALL QSSIGWSCPG LLPASNDMQS FNWEGSSGPS SAWAAVHHRH RHPWEHRDSA 180 TRAWIGLAPA TRPKRRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g22984.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311524.1 | 1e-105 | protein REVEILLE 4-like | ||||
TrEMBL | A0A2K2CIR4 | 1e-140 | A0A2K2CIR4_BRADI; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 | Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.2 | 1e-13 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g22984.1.p |