PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g22920.1.p
Common NameBRADI_5g22920, LOC100837038
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 467aa    MW: 48610 Da    PI: 7.2696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g22920.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00053513881254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +++eY+k L
  Bradi5g22920.1.p 351 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYVKFL 388
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.649339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-7349397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-10349403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-4349392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGDHELMHAA HPAMYNSNNG GAGAVSNGAG AMWWNTVPAA ACSTEQLAAG FGGTWQSALA  60
GSGYDVVAAA DGGKAKSCAA AATPASSESP GNNSSITFQE PTGCCLNDPA AAAGFTDWNH  120
TYMSNGTGAG NNLHGFLQVG HVQDNNMSAA RADHSMNASS LMSNNLDLAL QGSGSHQEQQ  180
LLSGLGQQAE LLLSPTSPYG FHSSSLLRSL MDNQPTAKPG IQQQQQQQYN QYGQQQQMVH  240
GGQISSQAAA GAGRGALQFT NDAAFWNNNP SAAAGFGVMM AAPAADQASM RAVKQSSPAP  300
PRAANLALKT VLEGVGDSSS ITTSRKKASG EPAFKKPRME TPSPLPTFKV RKEKLGDRIT  360
ALQQLVSPFG KTDTASVLHE TIEYVKFLHD QVGVLSAPYL KNGNHHHHQV PQYLKSSSAS  420
PDKPSKDGSE VSLKGRGLCL VPISSTFAVA SEVPVDFWTP FGAGFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g22920.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580620.10.0transcription factor bHLH112
TrEMBLI1J2810.0I1J281_BRADI; Uncharacterized protein
STRINGBRADI5G22920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1484144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.39e-46bHLH family protein