PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g20847.1.p
Common NameBRADI_5g20847, LOC100845756
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 276aa    MW: 32094.9 Da    PI: 9.2268
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g20847.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.6e-2418105286
          trihelix   2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W  qe+++Li+ar e+e++  +++       ++k+lWe+v++++r+rg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  Bradi5g20847.1.p  18 WGTQETRELIAARGELEREAAAASagaaasrSAKTLWEAVAARLRARGYRRTADQCKCKWKNLVNRYKGKETSNPEN----GRQCPFFEELH 105
                       ******************9997644445555*******************************************984....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00181483IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-41782IPR009057Homeodomain-like
PROSITE profilePS500907.2821781IPR017877Myb-like domain
PfamPF138371.1E-2117106No hitNo description
CDDcd122034.08E-161888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEAGVGGGGF RDERVPPWGT QETRELIAAR GELEREAAAA SAGAAASRSA KTLWEAVAAR  60
LRARGYRRTA DQCKCKWKNL VNRYKGKETS NPENGRQCPF FEELHAVFTE RARNMQRELL  120
QSESGASVKM KLKRTSDDRS SGESDDEEDE VEVSEDEKPM RSRKRKAGDK GQQLRRTVEN  180
SNTGRSSIRD LLHDFLVQQQ HMDIQWREVM ERRAQERLVF EQEWRRSMQK LEQERLMLEH  240
SWMEREEQRR MREEARAQKR DSLLTTLLNK LLQDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g20847.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580484.10.0trihelix transcription factor GT-3b
TrEMBLI1J1H60.0I1J1H6_BRADI; Uncharacterized protein
STRINGBRADI5G20847.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-23Trihelix family protein