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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g19190.1.p | ||||||||
Common Name | BRADI_5g19190, LOC100838548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 632aa MW: 66831.6 Da PI: 8.4107 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 315 | 1.7e-96 | 264 | 631 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL e+A a+++g+le a a La+l+ ++p+gd+ +Rl a+++ AL++r+a + s ++k ++ se+ + +l++++sP+++f+ Bradi5g19190.1.p 264 RQLLSEAAVAMADGNLETAAAHLATLKGAVNPRGDAEHRLLAMMVAALSSRIAPTASATSKHIAD-----LCGSEHRTGSQLLHDISPCFRFA 351 689***************************************************44444443333.....33667777889************ PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlva 183 +aN aI+eav+ ++vH +Dfdis + Q +aL+q La+R+ + sl++T+v +p+s + +l ++g rL+k+Ae+ g++ +f++ v Bradi5g19190.1.p 352 LHAANIAIVEAVADRRAVHLVDFDISVP-QHVALIQCLADRRVPGTSLKVTAVTDPTSPftesLTATLDAVGARLKKLAERAGIEYRFKI-VN 442 **************************98.99************************9988888778899*********************9.68 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 r ++++ ++L ++pgEalaVnl+++l r++desvs +++rde+L+ v++l P+vv++veqe++ n++++++rf++a+ +y a+++sl+a+++ Bradi5g19190.1.p 443 CRAAEIDSSKLGCEPGEALAVNLAFALSRVPDESVSPANPRDELLRRVRGLGPRVVTLVEQELNSNTAPLATRFTDACAHYGAILESLDATAG 535 899****************************************************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r+s +r+ E++ +++++ n+v ega+r er+e ++kWr+r+++aGF+pv+l +a+q+k+ + + + g+ v+ e+g l lgW++r +++ Bradi5g19190.1.p 536 RDSADRARAEEA-VANKAANAVGREGADRLERCEVFGKWRARFGMAGFRPVALAAGIADQVKARVGNSQ-PGFAVKPENGVLRLGWMGRVITV 626 ************.9999**************************************************99.9********************** PP GRAS 370 vSaWr 374 +SaWr Bradi5g19190.1.p 627 ASAWR 631 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.293 | 237 | 612 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-94 | 264 | 631 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MEQPGGPWRD PRQGYLYGVG SAMQTPLQQQ QQQRRRPDTA AVGGVLKRSL GEIERWQHQR 60 QVAMQQELYM RAVRQRTAVA SAISPLSSAD IAKVLGRGSS QPLVLSGSSL GGNLASPSST 120 LSSLTTASRA AIPLIQPQLH RQVPFVPSSE HALGVTRAPA PSATGSELSI LQELEKQLLF 180 DDDDEAEPAM SGTGSAVTSS EWEETMMIQQ LNPITAAPSP FPGVAAPNNN NINKGMTRSP 240 SNSSTSTASS SASCSPPTSA TTSRQLLSEA AVAMADGNLE TAAAHLATLK GAVNPRGDAE 300 HRLLAMMVAA LSSRIAPTAS ATSKHIADLC GSEHRTGSQL LHDISPCFRF ALHAANIAIV 360 EAVADRRAVH LVDFDISVPQ HVALIQCLAD RRVPGTSLKV TAVTDPTSPF TESLTATLDA 420 VGARLKKLAE RAGIEYRFKI VNCRAAEIDS SKLGCEPGEA LAVNLAFALS RVPDESVSPA 480 NPRDELLRRV RGLGPRVVTL VEQELNSNTA PLATRFTDAC AHYGAILESL DATAGRDSAD 540 RARAEEAVAN KAANAVGREG ADRLERCEVF GKWRARFGMA GFRPVALAAG IADQVKARVG 600 NSQPGFAVKP ENGVLRLGWM GRVITVASAW R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-39 | 259 | 631 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g19190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580377.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | I1J0W5 | 0.0 | I1J0W5_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G19190.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 | Representative plant | OGRP7599 | 9 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-79 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g19190.1.p |
Entrez Gene | 100838548 |