PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g18044.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 596aa    MW: 66163 Da    PI: 6.3356
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g18044.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.32e-29221532127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                       ppGfrF Ptdeelv +yL ++++g+++  +++i e ++y+++P +L   + +++e++wyf ++r++ky++g+r+ r t+  +g+Wka+  ++e
  Bradi5g18044.2.p  22 PPGFRFMPTDEELVEYYLLPRLQGRPHVPNDCIIEDNVYRCHPDELIdGHKDKGETSWYFLTPRSRKYTKGDRPDRCTDdhRGRWKASTGKTE 114
                       8*************************888899**************8455566788********************887669****9888899 PP

               NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                       + ++   + +++    tL ++ g   + +kt+W+m e +
  Bradi5g18044.2.p 115 IEKEtvgNVRVKFFESTLGYHVGPVDTETKTKWLMRELS 153
                       9888555555677789*******99999********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3520179IPR003441NAC domain
PROSITE profilePS5100538.30321179IPR003441NAC domain
PfamPF023651.0E-1622153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAEGEEQKKS GEEGEEKKST HPPGFRFMPT DEELVEYYLL PRLQGRPHVP NDCIIEDNVY  60
RCHPDELIDG HKDKGETSWY FLTPRSRKYT KGDRPDRCTD DHRGRWKAST GKTEIEKETV  120
GNVRVKFFES TLGYHVGPVD TETKTKWLMR ELSIKDFQIK LDQNSMKLDE YVMCRIYVTP  180
RHKSNNDDEA GPSGTSTCQE QEASPAPSQP EPVESGAQAQ GGAAPNKLSA RQKGKRPVEA  240
MRRGPMATPK RGSPLDLLLG PPAPLHAGGG MQPPFWPGRP MVNRARTSMM AFSGRVGPRA  300
HTSMPRPPMA FMGQVRPSVH ASMPRPPMAF SGQVPRFRAA HGAAAAGNFG QAMMMQRHMN  360
PAGQAFRLPP PPTVTRSPEE RMQPETEEMS EQRVLQQLEN EWMMHAGGMV QAQQQPATGN  420
VAAYPTQPMA FTEQHEWMCG TMEQQPGNVT YATQQPHEPM AFFAQQEQEQ QLYFDGDDNR  480
HQYLGQPMVL QSEFEFTPCN YQHVEVGQQF QSGCAVVVPD SAAATTPLAA STAEVQRAEE  540
PEPETGARMR GQTSEGNATT MRGSALLSWQ QRTGVLPDGT SASADDDGTR HDSQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-19121776166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g18044.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311838.10.0uncharacterized protein LOC100827131
TrEMBLA0A2K2CHY20.0A0A2K2CHY2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Representative plantOGRP1463834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.19e-26NAC domain containing protein 32