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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bradi5g17600.2.p |
| Common Name | BRADI_5g17600 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
MYB |
| Protein Properties |
Length: 275aa MW: 30206.2 Da PI: 6.704 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi5g17600.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 30.5 | 8.2e-10 | 2 | 42 | 6 | 46 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+eEde l++ v+ +G+ +W++I ++ + Rt+k+c++rw +
Bradi5g17600.2.p 2 AEEDEALLEHVRTHGPCDWSSIRSKGILPRTGKSCRLRWVN 42
59********************8876678**********87 PP
|
| 2 | Myb_DNA-binding | 43.6 | 6.9e-14 | 53 | 93 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++++eE+ +++ +q+G++ W++Ia +++ gRt++++k++w
Bradi5g17600.2.p 53 KFSAEEERVVIELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 93
79******************.*********.***********5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MAEEDEALLE HVRTHGPCDW SSIRSKGILP RTGKSCRLRW VNKLRPNLKS GCKFSAEEER 60
VVIELQAQFG NKWARIATYL PGRTDNDVKN FWSTRQKRLA RLLRAPLRGR SSRSSNAKAP 120
ASSLDPSVTE NLQCHQGSCH DHVSFLGTSS SGHCWASAPL MEYQVAAGIP HDQESSAFFS 180
FEGPLPLQAV PQLPLSDGEA SSSNAALFAP ELPFDQPPYH LLDFPGLSER CNIGPGFVGA 240
SAMDDLAYQE LLPIVQPAPT PMMLPFFGME CGRDA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL663000 | 2e-44 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. |
| GenBank | AL731613 | 2e-44 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. |
| GenBank | AP014960 | 2e-44 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 2e-44 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CR855218 | 2e-44 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
