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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi5g17570.1.p |
Common Name | BRADI_5g17570, LOC100846176 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
HD-ZIP |
Protein Properties |
Length: 226aa MW: 25361.7 Da PI: 9.1891 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi5g17570.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 74 | 128 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k
Bradi5g17570.1.p 74 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 128
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 126.2 | 1.5e-40 | 74 | 163 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
Bradi5g17570.1.p 74 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 163
69*************************************************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008283 | Biological Process | cell proliferation |
GO:0009641 | Biological Process | shade avoidance |
GO:0009733 | Biological Process | response to auxin |
GO:0009735 | Biological Process | response to cytokinin |
GO:0009826 | Biological Process | unidimensional cell growth |
GO:0010016 | Biological Process | shoot system morphogenesis |
GO:0010017 | Biological Process | red or far-red light signaling pathway |
GO:0010218 | Biological Process | response to far red light |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0048364 | Biological Process | root development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MMERAEDLGL SLSLSSSLAP RTHHVSKLFH APERRFMEMP LLPAKRSSEA AGDDSSLLGG 60 SDEEDGGCGV DGSRKKLRLS KDQSAVLEDS FREHPTLNPR QKAALAQQLG LRSRQVEVWF 120 QNRRARTKLK QTEVDCEFLK RCCETLTEEN RRLQKEVQEL RALKLVSPRH YMHMSPPTTL 180 TMCPSCERVS NKNNNNNNNN SSAAADRRGD VAICHRPIAV RPQQS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 72 | 78 | SRKKLRL |
2 | 122 | 130 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK122006 | 1e-155 | AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence. |