 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi5g17170.2.p |
| Common Name | BRADI_5g17170, LOC100825679 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 243aa MW: 27208.5 Da PI: 5.0868 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi5g17170.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.6 | 2.5e-19 | 53 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ft+eq++ Le+ F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++
Bradi5g17170.2.p 53 KRRFTEEQIRSLESTFHAhQAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
458**************989*********************************9 PP
|
| 2 | HD-ZIP_I/II | 122.7 | 1.8e-39 | 52 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL+++ydal+++ e+L++++ +L+++l+e
Bradi5g17170.2.p 52 RKRRFTEEQIRSLESTFHAHQaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRAKYDALHSRVESLKQDKLTLTTKLHE 144
8*******************99******************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MDRGEYQQQQ QFLMPPPALQ TMQQQRELCV PLMEEQLLMG GRRGGGAASE MRKRRFTEEQ 60
IRSLESTFHA HQAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFAALRAK 120
YDALHSRVES LKQDKLTLTT KLHELSERLR EQGGGAATAT ASSSSCGDGC SEELEVDDKR 180
NIGVEPPESC VLGGCATPAD VSVDSECGDH VDYSGGFPES FCATPELWEP WPWPPVEWNA 240
VA*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT224376 | 1e-130 | KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds. |
