PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

CO-like

Protein Properties

Length: 342aa MW: 35910.9 Da PI: 5.9001

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g14600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	6.9e-08	21	53	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgH 37 r C+ + + ++lfC+ + +lC C H gH Bradi5g14600.1.p 21 RACDACAGEAARLFCRADAAFLCTGCDARAH-GH 53 67****************************9.76 PP
2	zf-B_box	24.6	5.1e-08	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC+ C +H H++vp+ Bradi5g14600.1.p 60 VWLCEVCEHAPAAVTCKADAAALCAACDADIHAAnplarrHERVPV 105 679*****************************66888889999986 PP
3	CCT	70	6.2e-24	243	285	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+ Bradi5g14600.1.p 243 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 285 9****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.338	18	62	IPR000315	B-box-type zinc finger
SMART	SM00336	1.1E-6	18	62	IPR000315	B-box-type zinc finger
CDD	cd00021	9.75E-8	21	62	No hit	No description
Pfam	PF00643	6.6E-6	21	53	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.466	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.1E-6	60	105	IPR000315	B-box-type zinc finger
SMART	SM00336	9.1E-9	63	105	IPR000315	B-box-type zinc finger
Pfam	PF06203	6.4E-18	243	285	IPR010402	CCT domain
PROSITE profile	PS51017	16.936	243	285	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEGEEKSVAA GAGAYWGVGA RACDACAGEA ARLFCRADAA FLCTGCDARA HGHGSRHARV 60 WLCEVCEHAP AAVTCKADAA ALCAACDADI HAANPLARRH ERVPVAPFFG ALDVDAPNKH 120 FVGGAGAHAP AAAGINNEED EDDRSNDAEA ASWLLPEPDQ KVGGAFFADS DPYNLDLDFA 180 RSMDDIKAIS VQLNGAQAEL GLTGGNNKLF YSDHSMNHSV TSSEAAVVPE SAPVAVVSRG 240 REREARLMRY REKRKSRRFE KTIRYASRKA YAETRPRVKG RFAKRTGNGG AAALGEEEDE 300 HEGLYSSAAA AVAALLQAPG AGHGHGPELD YGVDGVVPTL V*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEGEEKSVAA GAGAYWGVGA RACDACAGEA ARLFCRADAA FLCTGCDARA HGHGSRHARV  60
WLCEVCEHAP AAVTCKADAA ALCAACDADI HAANPLARRH ERVPVAPFFG ALDVDAPNKH  120
FVGGAGAHAP AAAGINNEED EDDRSNDAEA ASWLLPEPDQ KVGGAFFADS DPYNLDLDFA  180
RSMDDIKAIS VQLNGAQAEL GLTGGNNKLF YSDHSMNHSV TSSEAAVVPE SAPVAVVSRG  240
REREARLMRY REKRKSRRFE KTIRYASRKA YAETRPRVKG RFAKRTGNGG AAALGEEEDE  300
HEGLYSSAAA AVAALLQAPG AGHGHGPELD YGVDGVVPTL V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g14600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606627	1e-115	AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence.
GenBank	AP014960	1e-115	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-115	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855209	1e-115	CR855209.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580070.1	0.0	zinc finger protein CONSTANS-LIKE 3
Swissprot	Q9SK53	6e-70	COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBL	I1IZ98	0.0	I1IZ98_BRADI; Uncharacterized protein
STRING	BRADI5G14600.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-19	CONSTANS-like 4

Link Out ? help Back to Top
Phytozome	Bradi5g14600.1.p
Entrez Gene	100821263

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177 [PMID:27999181]