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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g14600.1.p | ||||||||
Common Name | BRADI_5g14600, LOC100821263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 342aa MW: 35910.9 Da PI: 5.9001 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 6.9e-08 | 21 | 53 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgH 37 r C+ + + ++lfC+ + +lC C H gH Bradi5g14600.1.p 21 RACDACAGEAARLFCRADAAFLCTGCDARAH-GH 53 67****************************9.76 PP | |||||||
2 | zf-B_box | 24.6 | 5.1e-08 | 60 | 105 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC+ C +H H++vp+ Bradi5g14600.1.p 60 VWLCEVCEHAPAAVTCKADAAALCAACDADIHAAnplarrHERVPV 105 679*****************************66888889999986 PP | |||||||
3 | CCT | 70 | 6.2e-24 | 243 | 285 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+ Bradi5g14600.1.p 243 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 285 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.338 | 18 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-6 | 18 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.75E-8 | 21 | 62 | No hit | No description |
Pfam | PF00643 | 6.6E-6 | 21 | 53 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.466 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.1E-6 | 60 | 105 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.1E-9 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.4E-18 | 243 | 285 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.936 | 243 | 285 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEGEEKSVAA GAGAYWGVGA RACDACAGEA ARLFCRADAA FLCTGCDARA HGHGSRHARV 60 WLCEVCEHAP AAVTCKADAA ALCAACDADI HAANPLARRH ERVPVAPFFG ALDVDAPNKH 120 FVGGAGAHAP AAAGINNEED EDDRSNDAEA ASWLLPEPDQ KVGGAFFADS DPYNLDLDFA 180 RSMDDIKAIS VQLNGAQAEL GLTGGNNKLF YSDHSMNHSV TSSEAAVVPE SAPVAVVSRG 240 REREARLMRY REKRKSRRFE KTIRYASRKA YAETRPRVKG RFAKRTGNGG AAALGEEEDE 300 HEGLYSSAAA AVAALLQAPG AGHGHGPELD YGVDGVVPTL V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g14600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606627 | 1e-115 | AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence. | |||
GenBank | AP014960 | 1e-115 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-115 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855209 | 1e-115 | CR855209.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580070.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
Swissprot | Q9SK53 | 6e-70 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | I1IZ98 | 0.0 | I1IZ98_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G14600.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-19 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g14600.1.p |
Entrez Gene | 100821263 |
Publications ? help Back to Top | |||
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