PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13090.1.p
Common NameBRADI_5g13090, LOC100836604
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 738aa    MW: 78807.3 Da    PI: 6.7147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30298355260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+k
  Bradi5g13090.1.p 298 EDGYSWRKYGQKQVKHSEYPRSYYKCTHQSCQVKKKVERSH-EGHVTEIIYKGTHNHPK 355
                       8****************************************.***************85 PP
2WRKY104.75.1e-33531589159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Bradi5g13090.1.p 531 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 589
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28287356IPR003657WRKY domain
SuperFamilySSF1182902.48E-25291356IPR003657WRKY domain
PROSITE profilePS5081122.86292356IPR003657WRKY domain
SMARTSM007741.9E-33297355IPR003657WRKY domain
PfamPF031061.7E-23298354IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-37516591IPR003657WRKY domain
SuperFamilySSF1182907.85E-29523591IPR003657WRKY domain
PROSITE profilePS5081137.539526591IPR003657WRKY domain
SMARTSM007744.0E-38531590IPR003657WRKY domain
PfamPF031063.0E-25532589IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MDGGHTHIAM AMEQWKQHPN PGPECLMPSF LTDQFPPDPL AEDGSGNEAG FEKHGLSVAV  60
GSPQDEGKPA QLTPHFGGRM SGSSSSLSER MQARNGFSVP KLSMPFATPA GDDSEQSGVQ  120
PPIFTVPPGL SPASLLESPV FLSNAMGQAS PTTGKLFMLG DADDNNPTRI EAPSIEDGPA  180
AFSFKSLDLK SSRYIAEEMK ETLPSNQHPS LPSRDVPVKT ETNIQATQGA NPLGNKVYFN  240
GQELMKSSYH DSNKRNRLAP DTIVGRDSGS PPDHSQPAAD SEANPATMAT AATATPAEDG  300
YSWRKYGQKQ VKHSEYPRSY YKCTHQSCQV KKKVERSHEG HVTEIIYKGT HNHPKPAAQG  360
RRLPGVPQVH PFGDMDIAAD NNNNNDNNGN AGGATQQPNA EARPLWHGGG GMGVQDWRGG  420
DGLEATSSPG ELCDSSASMQ VHDGTATRFG SPEGVDVTSA VSDEVDGDDR VRAHGSMSQG  480
HNQGAADAGE GDELESKRRK LESCAIEMST ASRAVREPRV VIQTTSEVDI LDDGYRWRKY  540
GQKVVKGNPN PRSYYKCTHP GCSVRKHVER ASHDLKSVIT TYEGKHNHEV PAARNGGGHA  600
TSGSAAAQLA HARRPEPPSM AQDGLMMGRL GAPFGLPPRD PLGPMSNFPY SLGVGGYASS  660
GSLPSLPMPA AVEGLKLPML SPCSLHPLFR HRQAMDQTAA GSGFRVPKGE VKDESNNNSS  720
ASAYQQMMNR LPLGHRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36288592878Probable WRKY transcription factor 4
2lex_A2e-36288592878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579949.10.0probable WRKY transcription factor 20 isoform X2
TrEMBLA0A0Q3E9M80.0A0A0Q3E9M8_BRADI; Uncharacterized protein
STRINGBRADI5G13090.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-111WRKY DNA-binding protein 2