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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g12338.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 636aa MW: 71998.7 Da PI: 6.6098 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 346.1 | 5.8e-106 | 253 | 624 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cAeav+s+d++ a+++L++++ +sp+gd+ qRla+yf+++L+arla+++s+ y++l ++ts + + ++a++l+s ++ ++k++ Bradi5g12338.1.p 253 ETLLIRCAEAVASNDHRSASEVLEKIKRYSSPTGDSRQRLAHYFAQGLEARLAGTGSQFYRSLIGTRTS---TMKLVQAYHLYSATFCFFKVA 342 789************************************************************888887...6888899************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +l N++I++av+g +++Hi+ ++i+ G+QWp L+q La+R++gpp++R+T +++p++g +e++ee g+rL+++A+++g++f+fn+ ++ + Bradi5g12338.1.p 343 FLFSNKTIYKAVAGRKKLHIVHYGINIGVQWPELIQWLADREGGPPEVRMTSISKPQPGfrPSEQIEEAGHRLSNYASKFGMSFKFNA-ITAQ 434 ****************************************************************************************.6889 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 e+++ e+++++p+E+l+Vn+ +q ++l+des++++ +rd vL+++++++P v+v++ + +++++ F++rf +al+ ++++fd le+++p Bradi5g12338.1.p 435 PEAVRAEDIHIDPDEVLVVNSLFQFKTLMDESLTMDRvsPRDMVLNTIRKMKPSVFVHAITNGSYSAAFFMTRFRHALYNFASFFDVLETTIP 527 *********************************999888****************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r++++r k+Er +++r+++n+vacega+r+er +++++W+ r ++aG++++pl+ +++ k +++ + + ++++e++ +l++gWk+r L++ Bradi5g12338.1.p 528 RNNDKRLKMERDFFARSVMNMVACEGADRVERPQNYREWQTRNHRAGLRQLPLDPDIVLMLKDKVKNQYHKHFMINEDHRWLLQGWKGRVLYA 620 *********************************************************************999********************* PP GRAS 370 vSaW 373 +SaW Bradi5g12338.1.p 621 LSAW 624 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.172 | 226 | 605 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-103 | 253 | 624 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MAATQEELLG VIESAPVHPS VFLDHGDSKQ PQDDLSLEYI SRMLMEDDIV DKFTYQYTDH 60 PKLLQVEQPF AQILSAADTT SFDGDESSAL PDVLASALLP SKVQDPAFFS NGTGTVEPRN 120 DEFPMESASI TSMNKMPSTE FFKGMENTEM FLPRDFVMVD SRGCKNKFDV DGVTEAGMGR 180 SSKQIAVLVH ADSEEEDELK KSLDCLILNG YDRHPGEMQE LLITPDKENK VAQKSRRIRG 240 RRGATQTVVT DLETLLIRCA EAVASNDHRS ASEVLEKIKR YSSPTGDSRQ RLAHYFAQGL 300 EARLAGTGSQ FYRSLIGTRT STMKLVQAYH LYSATFCFFK VAFLFSNKTI YKAVAGRKKL 360 HIVHYGINIG VQWPELIQWL ADREGGPPEV RMTSISKPQP GFRPSEQIEE AGHRLSNYAS 420 KFGMSFKFNA ITAQPEAVRA EDIHIDPDEV LVVNSLFQFK TLMDESLTMD RVSPRDMVLN 480 TIRKMKPSVF VHAITNGSYS AAFFMTRFRH ALYNFASFFD VLETTIPRNN DKRLKMERDF 540 FARSVMNMVA CEGADRVERP QNYREWQTRN HRAGLRQLPL DPDIVLMLKD KVKNQYHKHF 600 MINEDHRWLL QGWKGRVLYA LSAWVADDAS SSNVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-44 | 256 | 624 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g12338.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581312.3 | 0.0 | scarecrow-like protein 33 isoform X1 | ||||
TrEMBL | A0A2K2CGS7 | 0.0 | A0A2K2CGS7_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09235.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-131 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g12338.1.p |