PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g10750.2.p
Common NameBRADI_5g10750, LOC100842813
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 341aa    MW: 39138.5 Da    PI: 11.2669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g10750.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05284305326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        e Cr+f++   C + ++C+FaH+
  Bradi5g10750.2.p 284 VEVCRDFLK-NMCTR-ESCRFAHP 305
                       699******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.732101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.061102128IPR000571Zinc finger, CCCH-type
PfamPF146080.097107127No hitNo description
PROSITE profilePS5010311.836136163IPR000571Zinc finger, CCCH-type
SMARTSM003560.23136162IPR000571Zinc finger, CCCH-type
PfamPF146083.5148161No hitNo description
PROSITE profilePS5010313.291178206IPR000571Zinc finger, CCCH-type
SMARTSM003560.14179205IPR000571Zinc finger, CCCH-type
PfamPF146083.1184203No hitNo description
PROSITE profilePS5010310.596208234IPR000571Zinc finger, CCCH-type
SMARTSM003562.4208233IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044281306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915282307IPR000571Zinc finger, CCCH-type
PfamPF146085.1E-4287305No hitNo description
PROSITE profilePS5010312.324313339IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048313338IPR000571Zinc finger, CCCH-type
PfamPF146080.029319337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASAEIPNAV TNDPNPTRSP SPPLPPRKRR LSLSPSRSPA LSPALSPRRS SSRSRSPRRE  60
RSRSRSRSRS RSRSRSRNRT RSRSRSRSPR QPDGKRARHS DLTVEVCRDY LRDRCTRSDL  120
ECKYAHPHQS VSVDRDNKVT ACADSLRNNC FRGRTCRYYH PPPHIQESLL RSIGVDAPPA  180
KMVCRDFARG RCSRSANECR FLHHSSVQES AIVCQDFLRG RCDRISCRYT HVIAQQMFPP  240
PMRDLPMQMQ YPEMVYMAPP PPHGVPMMVP PLSPPTAFAD HRRVEVCRDF LKNMCTRESC  300
RFAHPDSRSE VPNDRVEVCR DFKRGECTRP NCRFFHPSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A4e-151021691479Muscleblind-like protein 1
5u9b_A4e-151021691479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17686RNRTRSRSRSR
27886RTRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g10750.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691860.0AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579801.10.0zinc finger CCCH domain-containing protein 28
RefseqXP_024311274.10.0zinc finger CCCH domain-containing protein 28
SwissprotQ0JD071e-128C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLI1IXZ30.0I1IXZ3_BRADI; Uncharacterized protein
STRINGBRADI5G10750.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Representative plantOGRP1013666
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]