PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g10320.1.p
Common NameLOC100839172
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 465aa    MW: 49474.8 Da    PI: 7.0505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g10320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.84.1e-86744562374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +lLl+ A a + gd+++a  +L ++s +as +g dp+qR+aa+f+ ALa+rl+ s    + +++p++t+    ++++ a+++f+++sP+++f
  Bradi5g10320.1.p  74 MRLLLSSAAAAEVGDAHAAAVALREVSRHASFRGgDPVQRVAAHFADALASRLLLSPRAPAPIVAPRATP---AEQSFLAFTMFYQASPFYQF 163
                       689****************************9999*******************9555555566777776...88999999************ PP

              GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..................ppslRiTgvgspesgskeeleetgerLa 166
                       +h+taNqaIlea+e    + +H++Dfd+s G+QWp+L+q+L++ ++                     slRiTg+g     s++el+ t+ rLa
  Bradi5g10320.1.p 164 AHFTANQAILEAFEAGarRSLHVVDFDVSFGFQWPSLIQSLSDAAATtspqssdnsdaepqpaaaFYSLRITGFGT----SADELRDTEARLA 252
                       *************98767889********************987733345667788888887654449********....9************ PP

              GRAS 167 kfAeel.gvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFler 256
                       +fA+ + +++fef+ +v ++ ++l  l++++v+p+ +++Vnlv+   ++          +++ L +v+sl+P +v +++++++  +s+s+l r
  Bradi5g10320.1.p 253 RFAAGCpNLRFEFEGIVNNNGSALhGLKNIKVDPDSTVVVNLVFPAATTT---------TTSSLACVRSLNPSLVFLIDKDVQVqDSASLLPR 336
                       **998769********99988888579*****************776665.........3347*********************999****** PP

              GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sd 347
                       f+ +l+yy+a+f+sl++ lp++s er  +Er  lg ei  + a  + +   r+++ + W e +e aGF+ ++ls+++++qaklll++ +    
  Bradi5g10320.1.p 337 FAASLRYYAAVFESLHECLPADSAERLAIERDHLGAEIGHAMASLQGD---RRQHGGDWTEVMEGAGFEGARLSSRTVSQAKLLLKMKSggCG 426
                       *******************************************99999...677789*****************************9997556 PP

              GRAS 348 gyrveee...sgslvlgWkdrpLvsvSaWr 374
                       g+rv e    ++++ lgW+dr+L++++aWr
  Bradi5g10320.1.p 427 GFRVIECggeDKAMSLGWRDRALITATAWR 456
                       699985434388899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.66247431IPR005202Transcription factor GRAS
PfamPF035141.4E-8374456IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNLTLSLGVD GGGAAAKKRK VRDGDVVGAA GDGGDYGRIM RLLQARDRVA KVKLGDQYGN  60
DDDGSRGGGG LRLMRLLLSS AAAAEVGDAH AAAVALREVS RHASFRGGDP VQRVAAHFAD  120
ALASRLLLSP RAPAPIVAPR ATPAEQSFLA FTMFYQASPF YQFAHFTANQ AILEAFEAGA  180
RRSLHVVDFD VSFGFQWPSL IQSLSDAAAT TSPQSSDNSD AEPQPAAAFY SLRITGFGTS  240
ADELRDTEAR LARFAAGCPN LRFEFEGIVN NNGSALHGLK NIKVDPDSTV VVNLVFPAAT  300
TTTTSSLACV RSLNPSLVFL IDKDVQVQDS ASLLPRFAAS LRYYAAVFES LHECLPADSA  360
ERLAIERDHL GAEIGHAMAS LQGDRRQHGG DWTEVMEGAG FEGARLSSRT VSQAKLLLKM  420
KSGGCGGFRV IECGGEDKAM SLGWRDRALI TATAWRPCRK QNDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-418145727380Protein SCARECROW
5b3h_A5e-418145726379Protein SCARECROW
5b3h_D5e-418145726379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g10320.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227137.10.0scarecrow-like protein 23
TrEMBLI1IXU00.0I1IXU0_BRADI; Uncharacterized protein
STRINGBRADI5G10320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Representative plantOGRP81961117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.16e-44GRAS family protein