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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g09640.5.p | ||||||||
Common Name | BRADI_5g09640, LOC100830591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 461aa MW: 50215.8 Da PI: 6.3961 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.1 | 5.5e-27 | 146 | 211 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++e+gi++ln++a++L dv ++RRiYDi+NVLe+++liekk kn i+wkg Bradi5g09640.5.p 146 RYDNSLGLLTKKFINLLRQAEDGIIDLNDAAETL---DV--RKRRIYDITNVLEGIGLIEKKIKNTIHWKG 211 689*******************************...**..9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.5E-28 | 143 | 212 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.9E-34 | 146 | 211 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-17 | 146 | 209 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 5.6E-24 | 148 | 211 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.80E-41 | 221 | 328 | No hit | No description |
SuperFamily | SSF144074 | 3.92E-29 | 224 | 328 | No hit | No description |
Pfam | PF16421 | 1.8E-28 | 226 | 326 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MSGGGRPQVA RKVVQSVQRR VPLAPRLPPI AVPSEYHRFP VPLPSAAAAA ASRGSVRGDI 60 EEGIVTTKPL KRKAPCQKSD AAELTRRVMT SPGFTEGLGS PLTTPVSGKA SRTYKSKAKC 120 SKSGPQTPIS NAGSPGNPLT PAGSCRYDNS LGLLTKKFIN LLRQAEDGII DLNDAAETLD 180 VRKRRIYDIT NVLEGIGLIE KKIKNTIHWK GLDGSGSNSD NVVSVLQTEV ENLNLQEEVL 240 DEHISEMREK IREFIEEESN QRWLYLTEDD IKGLPCFQNG TLIAIKAPDG TTLEVPDPDE 300 QAGDYIKRRY RIVIRSTRGS IDLYLVSKFD EKIEELVDVA TPPRQAGLAT PTSMKGFRAI 360 EAGQSSGAKD MSPNIQYIHK TPDLNAQDFG GATITPEVDT DADYWILTDG DDVSITDMWK 420 TASEVQWDQF LAKEVTTTPC ALKQQPALAG KPTVVRPTHG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-24 | 141 | 212 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g09640.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581217.1 | 0.0 | transcription factor E2FA isoform X1 | ||||
TrEMBL | A0A2K2CG90 | 0.0 | A0A2K2CG90_BRADI; Uncharacterized protein | ||||
STRING | Traes_2DL_BD8048C15.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 | Representative plant | OGRP1225 | 17 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-104 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g09640.5.p |
Entrez Gene | 100830591 |