PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g06620.1.p | ||||||||
Common Name | BRADI_5g06620, LOC100833546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 419aa MW: 44016.2 Da PI: 6.7413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.8e-10 | 257 | 304 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Bradi5g06620.1.p 257 SHSLAERVRRKRISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 304 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.22E-16 | 251 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.88E-11 | 251 | 308 | No hit | No description |
PROSITE profile | PS50888 | 15.415 | 253 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-16 | 253 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-7 | 257 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-9 | 259 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MANDHFFPGD YFSSGLSAPF LGASYAQAPP SRSSGLDAAA MAFGLPWADQ QLPGAADSSA 60 ATTTAHFDSA LSSLVSSPAS AFFAHGGEDD VAIGDLIGRL GGICNGASAN NSCYSTPLSS 120 PPRGPPLPPA AFRALETGRL SRVSSSKSLG APATALEYAE AEASPNTSAM PDPPATTKGA 180 ARKRKAPAKC KAKAEPSPPL PATAVTNAIP KRPRVTDGGS SDENAAVPAK VELEEEKPEP 240 VKDYIHVRAR RGQATDSHSL AERVRRKRIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV 300 QSLQRQVEFL SMKLSTMNPQ LDLDGQYKPS KDMNQVTMPA YASDEPAGAF SYASSPADSF 360 AMGSAVAHHG LELQGTFSWE HDLQSMVQMG GASSSSHSQD PHAFYGQQTT VNHMKVEP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g06620.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751112.1 | 0.0 | transcription factor bHLH78 isoform X1 | ||||
Swissprot | Q9SRT2 | 2e-58 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A0Q3GMZ3 | 0.0 | A0A0Q3GMZ3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G06620.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12547 | 28 | 35 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 4e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g06620.1.p |
Entrez Gene | 100833546 |
Publications ? help Back to Top | |||
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