PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g06601.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 431aa MW: 50107 Da PI: 7.7438

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g06601.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	9.4e-18	11	92	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+e+GF ++k+k+k+ ++r + C+++g+++ k+ +++ ++++r+gCka +k+k++ +w +++eleHnH+l+p Bradi5g06601.1.p 11 EFYRQYAREAGFGIKKHKNKT-------MSRLYACYRQGSSTFYKTG-GERKLAKMSKRVGCKAAVKIKLK-GTEWFYENVELEHNHALNP 92 6***********9887554.......599*******99988.88999**************.99************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-14	11	92	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.0E-31	213	306	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MVFATCEEGY EFYRQYAREA GFGIKKHKNK TMSRLYACYR QGSSTFYKTG GERKLAKMSK 60 RVGCKAAVKI KLKGTEWFYE NVELEHNHAL NPNPCEVKHM RSQKNKDPVI MEYVDDLQQS 120 GVSPIATMNV LATLNGDPEL LPMNDRDLEN RRAANLREEQ VDDVKKLMAF FSEYRTHNPK 180 FYYDIEFDSA GVVKNIFWSH ASCQANYAEF GDVVTFDTTY RSNFYCMPLG MFVGSNHHLQ 240 NVIFGFVLVR DETQKTFEWV FRTFKNCMER KDPICILTDQ DQAMANALQA VFVRTIHRLC 300 RWHMLNKHAE SLNKLYHSNK GLEEKLLTAV NHPLTPAEFE NAWQEMVSEY ELESDPTLCS 360 LYELRASWIA SYFKDIFCGR MTSTQRSEST NRMVKGHHVD DSTPLHVFAK KMYQVLQRRK 420 DAEGQETVAS Q

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MVFATCEEGY EFYRQYAREA GFGIKKHKNK TMSRLYACYR QGSSTFYKTG GERKLAKMSK  60
RVGCKAAVKI KLKGTEWFYE NVELEHNHAL NPNPCEVKHM RSQKNKDPVI MEYVDDLQQS  120
GVSPIATMNV LATLNGDPEL LPMNDRDLEN RRAANLREEQ VDDVKKLMAF FSEYRTHNPK  180
FYYDIEFDSA GVVKNIFWSH ASCQANYAEF GDVVTFDTTY RSNFYCMPLG MFVGSNHHLQ  240
NVIFGFVLVR DETQKTFEWV FRTFKNCMER KDPICILTDQ DQAMANALQA VFVRTIHRLC  300
RWHMLNKHAE SLNKLYHSNK GLEEKLLTAV NHPLTPAEFE NAWQEMVSEY ELESDPTLCS  360
LYELRASWIA SYFKDIFCGR MTSTQRSEST NRMVKGHHVD DSTPLHVFAK KMYQVLQRRK  420
DAEGQETVAS Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g06601.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024311807.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2CFN8	0.0	A0A2K2CFN8_BRADI; Uncharacterized protein (Fragment)
STRING	Traes_5BL_8BAA498F1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-66	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi5g06601.1.p