PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g02300.2.p
Common NameBRADI_5g02300, LOC100838257
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 913aa    MW: 98726.7 Da    PI: 5.2726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g02300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07113140225
                       -S---SGGGGTS....--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartG....tCkyGdrCkFaH 25 
                       kt+lC++f+r G     C++G+ C++aH
  Bradi5g02300.2.p 113 KTSLCSYFRRHGagpdGCRHGEACRYAH 140
                       9*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.3E-10109148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.91E-5109147IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-4111142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981111143IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5113140IPR000571Zinc finger, CCCH-type
CDDcd005908.63E-5188253No hitNo description
SuperFamilySSF549284.71E-5191263IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.3E-5191267IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168742.99306912IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.84E-46308334IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.84E-46366470IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.84E-46541657IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.9E-63549657IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138476.3E-8597659IPR025714Methyltransferase domain
CDDcd024408.34E-6603657No hitNo description
Gene3DG3DSA:3.40.50.1504.9E-63797852IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.84E-46800912IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059587.7E-7804848IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300808840IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1504.9E-63887912IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MEEDKAQPPP PPQQQEIELA GDKCKRKKDS PEPATGDELE AASTAAAAGQ DKAQPPPQQQ  60
EIELPGDKRK REEDSSEPAT GDELAAASAA ASAGEEGGSG GGGGASQLHP MSKTSLCSYF  120
RRHGAGPDGC RHGEACRYAH TDEELRPRPD GTWDPTSDRA KKLRKVSAEA EEADEEMVTF  180
DDKSLDKCLV GLPRAWVTDR LKTFLQEQGI SYATAKKKKG MTVGFVTFGT VEELKNAVEV  240
LKENQSGGKE IKIADANRRS HQKSHTEGPV TDNGAATGNS SVAPATAEGT PMPEAEAASK  300
KTVRDAVTPL AHMTYNDQLE HKKNSVAQLL KKLTRNAKKA CPADVPNPDW VFKSKQIGGL  360
PCKLEGILES PVIDGYRNKC EFSAGHSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSGL  420
ACKYASMFQD FLQLSSLPVW NRMDNSGFWR QFTVREGRSP PQAVVAHDAE TQIAEVMLIV  480
QVCSTGVDEV LMKDELDKLS TTLVRGAATC LPPLPLTTIV VQDHKGISNV AAADCPLIPL  540
LVPKVDQSEE EAVDKTRIHD YISNLRFSIS PTAFFQVNTL AAERLYTLAG DWANLNSDTL  600
LFDVCCGTGT IGLTLAHRVG MVVGIEMNES AVLDARRNAL INGVKNCCFV CGKAEDVMGS  660
LLTEYLGSPQ QDIADSESNS EVGPTGKKED TVSGNEENLD SLTEKNDNGE SPQPKDISTD  720
HPTRVSDEAN GGSDNRGSEN LEGGHEYNEA IRKQNSEEAS LINAESLDTK AADCLEHTKK  780
SKDDSSISKT SVLPTGASQF KNFVAIVDPP RVGLHPTVIK ALRTHPRIRR LVYISCNPES  840
LVANAIELCT PTSENREKNK GHRGWRTMSS AGLARQRTKS MPNSEPFIPK RAMAVDLFPH  900
TSHCEMVMLF ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-1630366477372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-1630366476371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-1630366477372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257263RRSHQKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g02300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239665.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0Q3E1R50.0A0A0Q3E1R5_BRADI; Uncharacterized protein
STRINGBRADI5G02300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]