PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01920.3.p
Common NameBRADI_5g01920, LOC100829559
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 469aa    MW: 51335.4 Da    PI: 6.7296
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01920.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.91.1e-25185250171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Bradi5g01920.3.p 185 RYDNSLGLLTKKFINLLRGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 250
                       689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-27182251IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-32185250IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.3E-16185248IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.0E-23187250IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.30E-32261374No hitNo description
SuperFamilySSF1440749.94E-21263373No hitNo description
PfamPF164218.7E-23266371IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDGSSSLPLP RPSPTPQSPL PPQIFLRCPA PPPPGAAPAP AHVHFFRAPS PIPMYSPRIP  60
GPRYIAARPP TPSPPAAPAA MAPPRPPPLA QASAPAHPPS SEAATAPFPP PKPAAKGRPP  120
KPKAPKLERE NAQSEVGKVE TEQGHHKEGT TGPIKGIKRP KKQKGSSHGA TEGDAGPLFS  180
PNNCRYDNSL GLLTKKFINL LRGAEDGTLD LNKAAETLEV QKRRIYDITN VLEGVDLIEK  240
GLKNMIRWKG FDMIMPKEME RRTSELKEEI ESSYDEDYRL DEEILKVQAK LEALKVNKDT  300
RKWLYLSRED IIKIPRFQGS TLIAIKAPRG TCVEVRDPNA DMDIFKDLES QEKQYRILLR  360
SSMGPIDCYL ISDHQEISNP DQVAPDNLDP AVTTGSSQTP QQVDYHPSQA PEIGESNIVG  420
KQASEPSRMQ ELMSGILRIV PADADIDADY WLASEVDATM TDTWARAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-21185251774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01920.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239658.10.0transcription factor E2FC
TrEMBLA0A2K2CEX90.0A0A2K2CEX9_BRADI; Uncharacterized protein
STRINGBRADI5G01920.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-75E2F transcription factor 1