PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g43960.1.p
Common NameBRADI_4g43960, LOC100830973
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 106aa    MW: 10954 Da    PI: 6.6513
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g43960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.62.2e-263485358
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                       v+Y+eC++NhAa +Gg+avDGC+Ef++       ++ l CaACgCHR+FH+re +
  Bradi4g43960.1.p 34 VVQYRECQRNHAAGIGGYAVDGCREFLAC----LPPQDLLCAACGCHRSFHKRELA 85
                      689*************************9....56889***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-143484IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-233583IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-213683IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0953783IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGPKGQANGN STAAASEAEM NKQADQDGSG NKVVVQYREC QRNHAAGIGG YAVDGCREFL  60
ACLPPQDLLC AACGCHRSFH KRELAAAHSD SDFDAHASSF AAAGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g43960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238788.15e-72mini zinc finger protein 1
TrEMBLI1IUV51e-70I1IUV5_BRADI; Uncharacterized protein
STRINGBRADI4G43960.12e-71(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.11e-21mini zinc finger