PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g43330.1.p
Common NameBRADI_4g43330
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 360aa    MW: 39141.7 Da    PI: 4.1851
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g43330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.32.2e-17231525128
               NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +rF+ +  e v++yL + ++g+ l+ +e  i+++diy ++eP+dL +    + kae++ + + F+  ++++ + +r+ ra+ +g+W  + +d 
  Bradi4g43330.1.p  23 CRFDLSPLEAVTYYLPRLLSGEALNGAERlIHRADIYgNLEPEDLAAafppAPKAERTgDRFLFTLCKHQKGSRSRSARAAGAGTWTIQTTDV 115
                       68888999***************7776656******9456*****8446763333334477999999999999**************998887 PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v +  g +vg  k L f kg +++ ++  Wvm+ey+ 
  Bradi4g43330.1.p 116 VVDH-AGVKVGEVKHLSFKKGINKDKTSPGWVMEEYHC 152
                       7777.999*************999999*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.2919172IPR003441NAC domain
PfamPF023652.3E-823151IPR003441NAC domain
SuperFamilySSF1019411.44E-1924171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
LSLLARRYGL EMDHVDDEVF QLCRFDLSPL EAVTYYLPRL LSGEALNGAE RLIHRADIYG  60
NLEPEDLAAA FPPAPKAERT GDRFLFTLCK HQKGSRSRSA RAAGAGTWTI QTTDVVVDHA  120
GVKVGEVKHL SFKKGINKDK TSPGWVMEEY HCLLPEAVVE DGEMVLCKIH LSLSAQKARR  180
GSAAHRSGSQ EQEDQPAPMP VATAKRPAPA ASDHDLPSAK RARVDAQDEA TVEAAADYMD  240
GRFSCTMDEL LGGATDEDQE EEAPALPAGE AAQQIVDFDF DLPVLDEDAL SEIVLSLDDA  300
PMSLPAVEAE QPIASDEDFD FEFPTAEELN AMFSDVEDWP LSFAADGDFI RFPGLPAVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g43330.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239530.20.0uncharacterized protein LOC104585202
TrEMBLA0A0Q3EYD50.0A0A0Q3EYD5_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI4G43330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Representative plantOGRP9262314