![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g40250.1.p | ||||||||
Common Name | BRADI_4g40250, LOC100826901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 223aa MW: 22842 Da PI: 5.2468 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.7e-06 | 5 | 46 | 6 | 41 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ + C ++ lC+ C + H+ H++v Bradi4g40250.1.p 5 CDACGRAAAAVLCCADEAALCRRCDAAVHSAnrlagrHQRVE 46 ******99*********************6678999998875 PP | |||||||
2 | zf-B_box | 26 | 1.9e-08 | 65 | 105 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ek +fC +++ llC++C ++ H H+ Bradi4g40250.1.p 65 PACDICQEKTGYFFCVEDRALLCRSCDVAVHTAtaqassHR 105 57***************************995456666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.769 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-8 | 5 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.55E-6 | 5 | 45 | No hit | No description |
SMART | SM00336 | 1.9E-11 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 65 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.62E-8 | 65 | 109 | No hit | No description |
PROSITE profile | PS50119 | 9.3 | 67 | 109 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MKIGCDACGR AAAAVLCCAD EAALCRRCDA AVHSANRLAG RHQRVELLSS SSTGAGAGEG 60 DGTHPACDIC QEKTGYFFCV EDRALLCRSC DVAVHTATAQ ASSHRRFLIT GVRVGGSANA 120 QQDRHIVSPS SSSANGSSSI NVPPASSRTR GLADNDHLSA QTAARLLGVG GEDEEEAAAA 180 GQQQWPWSDI FADDSGVGNG MDDRQFYNGL VSEPAGSSGL TG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g40250.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576960.1 | 1e-160 | B-box zinc finger protein 23 | ||||
Swissprot | Q9SYM2 | 2e-42 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | I1ITL5 | 1e-159 | I1ITL5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G40250.1 | 1e-160 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-28 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g40250.1.p |
Entrez Gene | 100826901 |