PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g39137.6.p

Common Name

BRADI_4g39137, LOC100833617

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 423aa MW: 46472.2 Da PI: 6.9249

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g39137.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.7e-09	119	142	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e+C+++ +G Ck+G +Ck+ H+ Bradi4g39137.6.p 119 QEECKYYKTFGGCKFGKSCKYLHP 142 699********************8 PP
2	zf-CCCH	31.2	3.8e-10	168	190	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+y +C+F+H+ Bradi4g39137.6.p 168 KECQYYMRTGSCRYATNCRFHHP 190 79********************9 PP
3	zf-CCCH	31.5	3e-10	320	346	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+G +Ck++H++ Bradi4g39137.6.p 320 PGQPECQHFVKSGYCKFGVKCKYHHPR 346 5789*********************96 PP
4	zf-CCCH	26	1.6e-08	372	397	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C ++H++ Bradi4g39137.6.p 372 DQPVCTYYGRYGVCKYGPACLYNHPF 397 6899********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.31	116	144	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0064	116	143	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	120	144	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-6	120	142	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	122	141	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.2E-5	164	191	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.342	164	192	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	167	191	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.4E-7	168	190	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	170	189	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-5	319	346	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.347	319	347	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.5E-8	321	346	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	323	347	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	325	346	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.713	370	398	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.004	370	397	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	371	398	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.8E-6	372	397	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTCMSVCVCL QAKGSGSSGS SNKASSPPDD DQTPKEEYEE DLVPDIAAEV DSLGFVNKGS 60 KSSNSGDLMK TSYEGQMEPK ELKIDATEKG TYPKKFDETD DQKVAKEKRR DTVSEGSAQE 120 ECKYYKTFGG CKFGKSCKYL HPGGKERKAE VEEVELNFLG LPIRPGGKEC QYYMRTGSCR 180 YATNCRFHHP DPTNVASREP VLEHENGGDI PQQNVQGPSQ PNVSIWPADQ RTLNEHHAPF 240 LAPAPSYSAG MIPPQGMIPP QGMYPTPEWS GYHQVPLSPY YPPGTPFHHF PGPPVNHQIY 300 RGADVPGHQQ LPSDEYPERP GQPECQHFVK SGYCKFGVKC KYHHPRSLMP RPPPPPPQAG 360 TLSPLGLPLK PDQPVCTYYG RYGVCKYGPA CLYNHPFNFG HPVPAAGPPL AGQYLTPGNY 420 TV*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTCMSVCVCL QAKGSGSSGS SNKASSPPDD DQTPKEEYEE DLVPDIAAEV DSLGFVNKGS  60
KSSNSGDLMK TSYEGQMEPK ELKIDATEKG TYPKKFDETD DQKVAKEKRR DTVSEGSAQE  120
ECKYYKTFGG CKFGKSCKYL HPGGKERKAE VEEVELNFLG LPIRPGGKEC QYYMRTGSCR  180
YATNCRFHHP DPTNVASREP VLEHENGGDI PQQNVQGPSQ PNVSIWPADQ RTLNEHHAPF  240
LAPAPSYSAG MIPPQGMIPP QGMYPTPEWS GYHQVPLSPY YPPGTPFHHF PGPPVNHQIY  300
RGADVPGHQQ LPSDEYPERP GQPECQHFVK SGYCKFGVKC KYHHPRSLMP RPPPPPPQAG  360
TLSPLGLPLK PDQPVCTYYG RYGVCKYGPA CLYNHPFNFG HPVPAAGPPL AGQYLTPGNY  420
TV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g39137.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014758741.1	0.0	zinc finger CCCH domain-containing protein 65 isoform X3
Swissprot	Q2QTY2	0.0	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A2K2CT73	0.0	A0A2K2CT73_BRADI; Uncharacterized protein
STRING	BRADI4G39137.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-57	C3H family protein

Link Out ? help Back to Top
Phytozome	Bradi4g39137.6.p
Entrez Gene	100833617

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]