PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39137.4.p
Common NameBRADI_4g39137, LOC100833617
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 539aa    MW: 58547.4 Da    PI: 6.4578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39137.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-0997120326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       ++ C ++ r+GtC++G +CkF+H+
  Bradi4g39137.4.p  97 EPDCTYYIRFGTCRFGMKCKFNHP 120
                       689********************8 PP
2zf-CCCH27.36.3e-09235258326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +e+C+++  +G Ck+G +Ck+ H+
  Bradi4g39137.4.p 235 QEECKYYKTFGGCKFGKSCKYLHP 258
                       699********************8 PP
3zf-CCCH30.85.1e-10284306426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++++rtG C+y  +C+F+H+
  Bradi4g39137.4.p 284 KECQYYMRTGSCRYATNCRFHHP 306
                       79********************9 PP
4zf-CCCH31.14e-10436462127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f ++G+Ck+G +Ck++H++
  Bradi4g39137.4.p 436 PGQPECQHFVKSGYCKFGVKCKYHHPR 462
                       5789*********************96 PP
5zf-CCCH25.62.2e-08488513227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C ++ r+G CkyG+ C ++H++
  Bradi4g39137.4.p 488 DQPVCTYYGRYGVCKYGPACLYNHPF 513
                       6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.02294121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08994122IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-697120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-599122IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064232259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31232260IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6236258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5236260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4238257IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-5280307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342280308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6283307IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6284306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4286305IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5435462IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347435463IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7437462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5439463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4441462IPR000571Zinc finger, CCCH-type
SMARTSM003560.004486513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713486514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5487514IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6488513IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MADTDANPAP ESDPIASIPP SSPPAGDAAA AIEAQFADLA VTVELPASGW EDDDGPAAVP  60
EIATAGDEVT GDKVPAPAPT KAAVSDSGPR FPRRPAEPDC TYYIRFGTCR FGMKCKFNHP  120
ARRKKNRAKG SGSSGSSNKA SSPPDDDQTP KEEYEEDLVP DIAAEVDSLG FVNKGSKSSN  180
SGDLMKTSYE GQMEPKELKI DATEKGTYPK KFDETDDQKV AKEKRRDTVS EGSAQEECKY  240
YKTFGGCKFG KSCKYLHPGG KERKAEVEEV ELNFLGLPIR PGGKECQYYM RTGSCRYATN  300
CRFHHPDPTN VASREPVLEH ENGGDIPQQN VQGPSQPNVS IWPADQRTLN EHHAPFLAPA  360
PSYSAGMIPP QGMIPPQGMY PTPEWSGYHQ VPLSPYYPPG TPFHHFPGPP VNHQIYRGAD  420
VPGHQQLPSD EYPERPGQPE CQHFVKSGYC KFGVKCKYHH PRSLMPRPPP PPPQAGTLSP  480
LGLPLKPDQP VCTYYGRYGV CKYGPACLYN HPFNFGHPVP AAGPPLAGQY LTPGNYTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39137.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758741.10.0zinc finger CCCH domain-containing protein 65 isoform X3
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0Q3HTQ20.0A0A0Q3HTQ2_BRADI; Uncharacterized protein
STRINGBRADI4G39137.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-56C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]