PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g35760.1.p | ||||||||
Common Name | BRADI_4g35760, LOC100843103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 865aa MW: 92088.5 Da PI: 5.8358 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 127 | 182 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k Bradi4g35760.1.p 127 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 182 688999***********************************************999 PP | |||||||
2 | START | 161.9 | 4.9e-51 | 335 | 561 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++elvk ++++p+W s e +n+de+++ f++ + + +ea r++g+ + +a+lv +l+d + +W e+++ +a+t++ Bradi4g35760.1.p 335 LAAMDELVKVTQVDDPLWLPSLdsgfETLNNDEYRRAFPRVLAhspagFVSEATREVGLAIVSSAELVDSLMDAA-RWAEMFPcvvaRASTTD 426 789*****************9999**************9966699999***************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECTCEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghsk 163 is g g +qlm aelq+lsplvp R+++f+R+++q+ +g w++vdvS d p ++++ ++llpSg+++e++ ng+ k Bradi4g35760.1.p 427 IISGGmpgtrsGSIQLMHAELQVLSPLVPiREVTFLRFCKQHAEGLWAVVDVSADGVLRPDGgagngaAAGYMGCRLLPSGCVVEDMRNGYAK 519 *******************************************************99998877777889************************ PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 vtwv h+++++ +h l+r+l++sg+a ga++w+a lqrqc+ Bradi4g35760.1.p 520 VTWVVHAEYDETAVHHLYRPLLRSGQALGARRWLASLQRQCQ 561 *****************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.09E-22 | 109 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 114 | 184 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.301 | 124 | 184 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 125 | 188 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-19 | 127 | 184 | No hit | No description |
Pfam | PF00046 | 6.4E-19 | 127 | 182 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 159 | 182 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.06 | 323 | 565 | IPR002913 | START domain |
CDD | cd08875 | 9.09E-107 | 329 | 561 | No hit | No description |
SuperFamily | SSF55961 | 1.18E-25 | 330 | 561 | No hit | No description |
SMART | SM00234 | 1.1E-33 | 332 | 562 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-42 | 335 | 561 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-13 | 640 | 781 | No hit | No description |
SuperFamily | SSF55961 | 1.1E-13 | 813 | 853 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MSFGGMFDGA GSGVFSYDAG GGAGMHNNPR LLPSPPLPRP GGGGFGSSTG LSLGLQQTNM 60 SMESGGPLAG DANRMVGLMG SSGSGGDGDS LGRGREDEND SRSGSDNLDG ASGDELDPDN 120 SNPRKKKKRY HRHTPQQIQE LEAVFKECPH PDEKQRMELS RRLNLESRQV KFWFQNRRTQ 180 MKTQIERHEN ALLRQENDKL RAENMTIREA MRSPICGNCG GAAVLGEVSL EEQHLRIENS 240 RLKDELDRVC SLAGKFLGRP ISTITSGLEF GIGATNGFGA LGPLGGSSSS VLQSIPDLMG 300 GSSAAAMRLP AGISGLDDAE SAIAVDRGVL LELGLAAMDE LVKVTQVDDP LWLPSLDSGF 360 ETLNNDEYRR AFPRVLAHSP AGFVSEATRE VGLAIVSSAE LVDSLMDAAR WAEMFPCVVA 420 RASTTDIISG GMPGTRSGSI QLMHAELQVL SPLVPIREVT FLRFCKQHAE GLWAVVDVSA 480 DGVLRPDGGA GNGAAAGYMG CRLLPSGCVV EDMRNGYAKV TWVVHAEYDE TAVHHLYRPL 540 LRSGQALGAR RWLASLQRQC QYLAILRNNS LPSQDNQAIS PVGRRSMLKL AQRMADNFCA 600 GVCATAAQKW RRLDEWRVEG AMPGGGDQQQ HQAGGGDGDK EVRMMARHSV GAPGEPPGVV 660 LSATTSVRLP GTPPQRVFDY LRDEQRRGEW DILANGEAMQ EMDHIAKGQL HGNAVSLLRP 720 NATSGNQNNM LILQETCTDS SGSLVVYAPV DVQSMHIVMN GGDSAYVSLL PSGFAILPDG 780 HNTPPGAVVD PAGSSQQSQQ GSSESAAHGN NNTGSLVTVA FQILVNNLPT AKLTVESVDT 840 VSNLLSCTIQ KIKSALQASN NISP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | RKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g35760.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578475.1 | 0.0 | homeobox-leucine zipper protein ROC6 | ||||
Swissprot | Q7Y0V7 | 0.0 | ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6 | ||||
TrEMBL | I1IS18 | 0.0 | I1IS18_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G35760.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g35760.1.p |
Entrez Gene | 100843103 |