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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g34870.5.p | ||||||||
Common Name | BRADI_4g34870, LOC100822174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 32041.9 Da PI: 6.2417 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.2e-09 | 121 | 168 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Bradi4g34870.5.p 121 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168 799***********************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.91E-11 | 115 | 172 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-17 | 115 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 117 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.396 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 121 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-10 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MAGFSHLPQQ MEYGLTNAGS FLFCHGHVVA ASANPEDAAS LETSSGVLDT PPMATSSVEK 60 KRRPCREEHT VSLKSAHSPK EPKENTRKRG GKKQSKEVDE EEEEPKGYIH VRARRGQATD 120 SHSLSERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS 180 LSPVLYGFGM DRDVSFSDQL QKIEGICHEA AAMPSDPAMN RSSTSPAPSQ AIMDTDTSSS 240 SPHYSLQGTN GGMSLSQDNG SSIGYMMQTV GEPREELFNQ VVFSNYMCSF Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g34870.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365468 | 1e-159 | AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238344.2 | 0.0 | transcription factor BEE 1 isoform X1 | ||||
Refseq | XP_010238345.2 | 0.0 | transcription factor BEE 1 isoform X1 | ||||
TrEMBL | A0A0Q3HBX5 | 0.0 | A0A0Q3HBX5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G34870.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g34870.5.p |
Entrez Gene | 100822174 |