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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g34870.1.p | ||||||||
Common Name | BRADI_4g34870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 32951.9 Da PI: 6.3479 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 130 | 177 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Bradi4g34870.1.p 130 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 177 799***********************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.54E-11 | 124 | 181 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-17 | 124 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.396 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 126 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-6 | 130 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-10 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MAGFSHLPQQ MEYGLTNAGS FLFCHGHVVA ASANPEDAAS LETSSGVLDT PPMATSSVEK 60 KRRPCREEHT VSLKSAHSPK SLHCLKNNQE PKENTRKRGG KKQSKEVDEE EEEPKGYIHV 120 RARRGQATDS HSLSERVRRE RISERMRMLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV 180 EFLSMRIASL SPVLYGFGMD RDVSFSDQLQ IEGICHEAAA MPSDPAMNRS STSPAPSQAI 240 MDTDTSSSSP HYSLQGTNGG MSLSQDNGSS IGYMMQTVGE PREELFNQVV FSNYMCSFQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g34870.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365468 | 1e-151 | AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238346.2 | 0.0 | transcription factor bHLH78 isoform X2 | ||||
TrEMBL | A0A0Q3IY02 | 0.0 | A0A0Q3IY02_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G34870.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g34870.1.p |