PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34350.1.p
Common NameBRADI_4g34350, LOC100837321
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 373aa    MW: 38907.4 Da    PI: 5.9384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08187234455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i  ++  L++l+P +    +k   Ka +L + ++Y++sLq
  Bradi4g34350.1.p 187 SHSLAERVRREKITIKMKMLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 234
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-16181253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-8181238No hitNo description
PROSITE profilePS5088814.488183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16183251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDGDYVASLL MGGGSSGLDF GALGMDGGFL ETLCGGGGGV GFAGRAAGMS GAVGGGQFGV  60
AEGSGAASRE GSSVSDPAWA SYARPDGANA KKRKAPAGAS GKGKEAAAAA ACFGKVGEAT  120
GPESKKCKVE VAPVKPKVEE TASDGSAGGE RGRKQAKGKS SKSKQADDEP PRDYVHVRAR  180
RGQATDSHSL AERVRREKIT IKMKMLQDLV PGCNKVIGKA LMLDEIINYV QSLQQQVEFL  240
SMKLATVNPQ LDFSTLSTLL HKDMNEAFGP SPSSVFPLES AGGAFPFYEQ ADIFQSFGSG  300
SMENQCPLGL LDTVLPHASN PQYAFHKQQQ NFWDENLQNA LHIDNEQSRG NGVSAPNVDG  360
QLQAADHTET EF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578371.10.0transcription factor BHLH089 isoform X1
TrEMBLI1IRH90.0I1IRH9_BRADI; Uncharacterized protein
STRINGBRADI4G34350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.28e-52bHLH family protein