PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34022.1.p
Common NameBRADI_4g34022, LOC100830566
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 690aa    MW: 75401.1 Da    PI: 4.2937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.82.3e-4591342128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  ++++++k+w+f s+ d+ky++g+r++r+t++gyWkatgkd+++
  Bradi4g34022.1.p   9 PPGFRFSPTDEELVLYFLKRRIASGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFCSRLDRKYPNGSRASRTTAEGYWKATGKDRTI 99 
                       8*********************9999555..6**************94357788999************************************ PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ +g++vg kktLv+++grap+g +tdWvmhey++
  Bradi4g34022.1.p 100 CN-GGRAVGNKKTLVYHHGRAPRGDRTDWVMHEYTI 134
                       *9.9******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-516157IPR003441NAC domain
PROSITE profilePS5100550.0968157IPR003441NAC domain
PfamPF023655.5E-239134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MENPPPRWPP GFRFSPTDEE LVLYFLKRRI ASGRPTPYIA DVDVYKSHPS HLPERSALRT  60
GDKQWFFCSR LDRKYPNGSR ASRTTAEGYW KATGKDRTIC NGGRAVGNKK TLVYHHGRAP  120
RGDRTDWVMH EYTILGDALP PTAQGREGYA LYKLFQKSGV GPKNGEQYGA PFREEDWLDD  180
DEGELQLPVE AADPIPTTVA SDRAGTVDEQ IGDLEALLLQ TGNDQINIGP PSDLSTPVPS  240
QVLFQHGQSQ GWPTAEDNRS EVADATTSSR AMLVADNTCT ELPFGDLEGL LMEISDEQRS  300
AELFSEFSNP VPQLQLQHDD QEAWLNADME EVSVADYTTS SGVVETAECT GIELPYGDLE  360
GLLLQIENDQ ENIEPLTDFS LPVSHHECHQ VGVGDLQRCH GAMFSSVDPS SAVQGSTNFE  420
PQLEPSNQIA QSALTCMPLS WEANCTEETS VMQSVSGLAS YDGQDSHEEF LEINDFFDSE  480
DIGQSMNCTT TEHLISASSG MFDSLEYSDA SMFLPGSFDT AGVVTENQYV DFGDSGYKSQ  540
GVQYTAELWA HNQVALNMQN HMKHNHVGLS SHASGTANNI VNEEPLNRSP NTSQSWFNSA  600
LSTLLDAVPA SPALAAESNV LNRTLQRISS FRSEQVSNES SAPVIHVRRG GALISISLLV  660
LLAAILWTLA TASGSAIKFC KGLWQSSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-42913416140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578349.10.0NAC domain-containing protein 17
TrEMBLI1IRD40.0I1IRD4_BRADI; Uncharacterized protein
STRINGBRADI4G34022.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.16e-64NAC domain containing protein 16