PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g33740.4.p
Common NameBRADI_4g33740, LOC100831675
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 444aa    MW: 49297.6 Da    PI: 7.6818
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g33740.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-11124156133
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 
                       e++ k  rr+++NReAAr+sR+RKka+i++Le 
  Bradi4g33740.4.p 124 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLES 156
                       6778999************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-7122169No hitNo description
SMARTSM003381.9E-6124213IPR004827Basic-leucine zipper domain
PfamPF001703.2E-8125156IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002126168IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-7128168No hitNo description
PROSITE patternPS000360131146IPR004827Basic-leucine zipper domain
PfamPF141446.0E-28222295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MYLDHGHGSQ HASAHHQEQR QTLNIFPSQP MHVEPSPKGE ISLAVLSPAP VGSKMPRSSP  60
DHHQHQHQLQ QAAMEELAGS RRQQEHHLAV QQQHQQPFAA EPAGVSKDVK PLAKKDKRGL  120
STSERDPKTL RRLAQNREAA RKSRLRKKAY IQQLESSRIR LAQIEQELHS ARAQGVFFPG  180
SGLLTEQGVT GKGLGGIDGL SSEAAMFDVE YGRWQEEHYR VMYELRAALQ QQLPEGELQM  240
YVENCLAHHD EVVAIKDAVI KGDVFHLTSG VWRSPAERCF LWLGGFRPSE VIKMVLGHVE  300
PLAEQQIVAV YGLQQSAAET EEALSQGLDA LYQSLSDTVV SDALSCPPAN VANYMGQMHV  360
AMNKLSTLEG FVRQAENLRQ QTLHRLHQVL TTRQMARSLL AVSDYFHRLR TLSSLWVTRP  420
RPPPQDHQQP GDGAGAGGTP HSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g33740.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666600.0AK366660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2045H07.
GenBankAK3756510.0AK375651.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3100G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238296.10.0transcription factor TGA2.2 isoform X1
SwissprotQ52MZ21e-156TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLI1IR940.0I1IR94_BRADI; Uncharacterized protein
STRINGBRADI4G33740.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-139bZIP family protein