PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32967.2.p
Common NameBRADI_4g32967
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 310aa    MW: 33727.2 Da    PI: 6.3131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32967.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.4e-173382255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + +h++ E+rRR++iN++f+ Lr+llP+     ++K +Ka+ L +++eYI+ Lq
  Bradi4g32967.2.p 33 KSKHSATEQRRRSKINDRFQILRDLLPHT----DQKRDKATFLLEVIEYIRFLQ 82
                      578*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-2428103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1829102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.4823181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-163386No hitNo description
PfamPF000106.9E-153382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-133787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGHVFVAELA VRVDGKGGSC SGSGTDQRPN TPKSKHSATE QRRRSKINDR FQILRDLLPH  60
TDQKRDKATF LLEVIEYIRF LQEKAQKYEA SFPEWNQENA KLLPWSNIYF RSSWKSAQSK  120
GQIPEDALPD PSQFVTNGSS PGFNITGKLD DNHTTVASGA VAGTPDLAEN DHMASVSCRS  180
AETPINITNN VTSQYQPQWA GPSGVDDCAV NSSMLNDQQL TIDEGTISVS SQYSQELLNT  240
LTHALQSSGI DLSQANISVQ INLGKRAVKR SVAGQSSSSK ELTDPDPSNE MVAAEELPHA  300
TKRHKSGNT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32967.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537240.0AK353724.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002F06.
GenBankAK3759500.0AK375950.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3110M08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758148.10.0transcription factor BIM2 isoform X1
RefseqXP_024310602.10.0transcription factor BIM2 isoform X3
TrEMBLA0A0Q3HQZ20.0A0A0Q3HQZ2_BRADI; Uncharacterized protein
STRINGTraes_5AL_0D4BDDDCD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-63BES1-interacting Myc-like protein 2