PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32060.1.p
Common NameBRADI_4g32060, LOC100844721
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 248aa    MW: 26531.1 Da    PI: 6.8921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08173213954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Bradi4g32060.1.p 173 ARLRRERISERIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 213
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-13163222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14166222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5174213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-6186218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDFDLLLSSS PEAQLALMNT MLQLEQALIA DQSPMASSVD TSSPPISPVQ TPPHSHSLSP  60
PPHVSSLSCT TTDASAIGYN NQDMYFSMPV AYGGAGIGIG IGAQQEYYMP PGGTRAAPQP  120
PQRDAMREMI FHIAALQPVM NDDDDVEAAG AVRPAKKQRR NVRTSKDPQS VAARLRRERI  180
SERIRVLQRL VPGGTKMDTA SMLDEAIHYV KFLKSQVQSL ELAAAHRAAA FGAGAAYPAA  240
GLQHAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922082e-83FP092208.1 Phyllostachys edulis cDNA clone: bphyem204g02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578226.10.0uncharacterized protein LOC100844721
TrEMBLI1IQQ21e-180I1IQQ2_BRADI; Uncharacterized protein
STRINGBRADI4G32060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-32bHLH family protein