PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32050.1.p
Common NameBRADI_4g32050, LOC100827812
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 405aa    MW: 42982.2 Da    PI: 8.9856
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35271202103
                       HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+l
  Bradi4g32050.1.p  27 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQL 110
                       9********************6667*****************************************999.........*************** PP

                       XXXXXXXXXX CS
      HSF_DNA-bind  94 lekikrkkse 103
                       l++i+r+k++
  Bradi4g32050.1.p 111 LCEIHRRKTS 120
                       *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3616112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5823117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.53E-3124117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3027117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MERCGSWSDC DAAAAQAAAQ KAVPAPFLTK TYQLVDDPAT DHIVSWGDDR VSTFVVWRPP  60
EFARDILPNY FKHNNFSSFV RQLNTYGFRK VVPERWEFAN EFFRKGEKQL LCEIHRRKTS  120
GSTTSPSPPP FFAPPHFPLF HHPGVSVAQH HHQQFVGDDG VIAAAAHGMG VLPFMQPHWQ  180
QREQSQSAAP VATRLLALGP SSEGGSRAAN NAAAAGALMA ENERLRRSNA ALLQELSHMR  240
KLYNDIIYFV QNHVRPVAPS PAAATFLQGL GLQAPARKKQ PATAAAGNGL NTSGGSTTSS  300
SSLTIADELS PPPPHHLAAE KSGGEGAGSS SAARSSAAAP TKLFGVHLSA TPFGAGSKRP  360
PSPEAELPST PPATKPRLLL ECDDLSLSVA QPCAATSSPA RASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221711920131Heat shock factor protein 1
5d5v_B5e-221711920131Heat shock factor protein 1
5d5v_D5e-221711920131Heat shock factor protein 1
5hdg_A5e-22231197112Heat shock factor protein 1
5hdn_A5e-22231197112Heat shock factor protein 1
5hdn_B5e-22231197112Heat shock factor protein 1
5hdn_C5e-22231197112Heat shock factor protein 1
5hdn_D5e-22231197112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560021e-180AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576600.10.0heat stress transcription factor B-4c
SwissprotQ67U941e-162HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLI1IQQ10.0I1IQQ1_BRADI; Uncharacterized protein
STRINGBRADI4G32050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-57heat shock transcription factor B4