PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30350.1.p
Common NameBRADI_4g30350
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 466aa    MW: 46979.5 Da    PI: 6.9303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11260308555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a  ++    +Ka++L + ++Y+k Lq
  Bradi4g30350.1.p 260 HSIAERLRRERIAERMKALQELVPNA--NKWMQTDKASMLDEIIDYVKFLQ 308
                       99***********************7..48888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-13253312No hitNo description
SuperFamilySSF474591.57E-16253318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.463255307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15259316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8260308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12261313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MQPTTRELQA MAAAAAGAGQ ISMGDLRNNG HAGPGGANGG GGGVHDDFLD QMFGSLPPSA  60
WHELATAAAA AKPPEDDSGM QQQQQFGGPY DESVMLASRL RQNQISGGGG PGSGAGGAAK  120
QMVLQQLADL RQAGHGHGHH MMLQGGTGRG DSGMILPLTL GNGGSGGDVQ ALLKAAANSA  180
GGEAGVFGGF AGSLQQQQQH FQPHPQQQTA PMPNQTFGGG AASGGGAQPQ AGAGGGGGGG  240
TQAPPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKWMQ TDKASMLDEI  300
IDYVKFLQLQ VKVLSMSRLG GAAAVAPLVA DMSSEGRGGA GNGGGPAAES DSLTVTEQQV  360
AKLMEEDMGA AMQYLQGKGL CLMPVSLASA ISSATCQLRP PSGHAFPHHL NAMRQMHDAA  420
VPASPSMSVL TAQSAMVPGN NGGACAADGG AEASHPKDAA SVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30350.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238168.10.0transcription factor bHLH66 isoform X1
SwissprotQ9ZUG96e-74BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0Q3HQ690.0A0A0Q3HQ69_BRADI; Uncharacterized protein
STRINGBRADI4G30350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-46LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]