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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bradi4g29380.1.p |
| Common Name | BRADI_4g29380, LOC100836063 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 309aa MW: 32981.6 Da PI: 4.7256 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi4g29380.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.5 | 1.3e-19 | 85 | 140 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
Bradi4g29380.1.p 85 RTKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGMAPRQVAVWFQNRRARWK 140
67789**************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 122.6 | 1.9e-39 | 86 | 177 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+d+l +++++L +++++Lr+++
Bradi4g29380.1.p 86 TKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGMAPRQVAVWFQNRRARWKAKQLERDFDALRAAHDHLLASRDALLADNDSLRSQVI 177
69****************9999******************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MESGLLMFSS TAPCRAGGGQ MMLFGGSGSF LGGSPAVSGL EDGRRRKRPF LTTAPEDDLQ 60
MEEYENEMCG YGGLDLEEHA PGTGRTKRRL TAEQVRALER SFEEEKRKLE PERKSELARR 120
LGMAPRQVAV WFQNRRARWK AKQLERDFDA LRAAHDHLLA SRDALLADND SLRSQVISLT 180
EELQAKASSP TSEPEEHTTA SGMVHAGASA PAAQAAQPKE GCDAGAGAAG RVAAPAMGIA 240
GGSPESYSCF ADARSPPSCS DDDCGGAASS EGGCAFFLPD GAMIEAAVER ESEAEAATQL 300
NYWAWFWN*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 134 | 142 | RRARWKAKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356850 | 1e-103 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
