PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g29370.1.p
Common NameLOC104585091
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 295aa    MW: 32157.3 Da    PI: 4.9409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g29370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89e-09166211555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++ r RR+ri ++ +eL +l+P       +Kl+ ae+L++A +++k Lq
  Bradi4g29370.1.p 166 QSAAARERRRRISEKTAELSRLIPGG-----QKLNTAEMLQEAARHVKLLQ 211
                       5678899999**************86.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-11158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.916161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6167211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-5177214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSMAALSFQY PTTAAPLFHR QLDDGGRDVS YLQDVHPDVT DALLGFVYDP LDPAVNAGLD  60
EFLNLPLHHD DDDDQKHRVN KKPRADDGAA WFDFTATDAA DGIATGQPWD NAGAQPAPEV  120
LPQFLTEFAL PLPPPPPQVY PPAFVRGSDA KRLQANEGRQ QQPSTQSAAA RERRRRISEK  180
TAELSRLIPG GQKLNTAEML QEAARHVKLL QAQVGMLALL RTIEEEKVPA MAQEQMHALL  240
VSGGVQERLA AEGKCLVPRQ LVDAVAKDPA VKSNALVNRD LARFMESLPA AEQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g29370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239355.10.0uncharacterized protein LOC104585091
TrEMBLI1IPU40.0I1IPU4_BRADI; Uncharacterized protein
STRINGBRADI4G29370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.18e-23bHLH family protein