PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26520.8.p
Common NameBRADI_4g26520, LOC100835567
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 441aa    MW: 50161.7 Da    PI: 7.2441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26520.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.27.4e-87214374374
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                       +L ecA +v++g++ +++  L +++elas  + p+qRl   ++  L +rl+r +++ ++al  ps+  e        a++ f  +sP+l  ++
  Bradi4g26520.8.p  21 VLCECAVHVTEGSFDKTDCSLRKIRELASIVDGPLQRLSLIIADSLFRRLLRPMQGFASALiDPSRYLE--KWCLRVARNSFASISPYLATGF 111
                       699*************************************************99999988854544442..3444457778************ PP

              GRAS  96 ltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +t N+aIle v+ ++ v iiD++ s  +  QW+ +l+ +  Rp+gpp+lR+T+v++    ++e l  ++  L+k A +l  +f+f+  v+ rl
  Bradi4g26520.8.p 112 VTINRAILEQVQDKQVVRIIDLSGSttHQWQWLKILHDFHGRPGGPPELRLTVVHE----DSEFLDYMQTLLSKQAGTLMPSFHFDK-VVGRL 199
                       **********************8651155678999*********************....99*************************.7999* PP

              GRAS 187 edleleeL....rvkpgEalaVnlvlqlhrll............................................desvsleserdevLklv 231
                       e+l++++L    +++ gEa++++++lq+hrll                                            + + ++++   ++L++v
  Bradi4g26520.8.p 200 EALDFSNLreilKINFGEAVVISCALQMHRLLavdddddasrdgiaqlqqmankahlkqmmmassprstlsypqtpSPQRQIPKLLVSFLSAV 292
                       ***9999844335555*********************************************************988666677778889***** PP

              GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                       + l+P++vv++eqeadhn++ F erf+e l+yy+alfdsl +a ++re++er+ vEr+ll++ei+n++ cega+r erhe+l++W++ ++++ 
  Bradi4g26520.8.p 293 RALKPNIVVMMEQEADHNAPLFRERFAEMLRYYAALFDSLnAAAAGREDDERARVERVLLREEIKNMLVCEGAQRHERHEKLSQWEMHMNRCE 385
                       ****************************************989999999******************************************** PP

              GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       F++vpls +a  + k  +   + ++   +ee+++ l+l W +  L+svSaWr
  Bradi4g26520.8.p 386 FQSVPLSFDAIREGKEKMMSSGlKECRGIEEDKHRLLLSWGETHLYSVSAWR 437
                       **************99999999888899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.5541416IPR005202Transcription factor GRAS
PfamPF035142.5E-8421437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MHGAGSQEQR MQDHLAQLGP VLCECAVHVT EGSFDKTDCS LRKIRELASI VDGPLQRLSL  60
IIADSLFRRL LRPMQGFASA LIDPSRYLEK WCLRVARNSF ASISPYLATG FVTINRAILE  120
QVQDKQVVRI IDLSGSTTHQ WQWLKILHDF HGRPGGPPEL RLTVVHEDSE FLDYMQTLLS  180
KQAGTLMPSF HFDKVVGRLE ALDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDDDDAS  240
RDGIAQLQQM ANKAHLKQMM MASSPRSTLS YPQTPSPQRQ IPKLLVSFLS AVRALKPNIV  300
VMMEQEADHN APLFRERFAE MLRYYAALFD SLNAAAAGRE DDERARVERV LLREEIKNML  360
VCEGAQRHER HEKLSQWEMH MNRCEFQSVP LSFDAIREGK EKMMSSGLKE CRGIEEDKHR  420
LLLSWGETHL YSVSAWRPRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-312443925381Protein SCARECROW
5b3h_A3e-312443924380Protein SCARECROW
5b3h_D3e-312443924380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g26520.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576356.20.0scarecrow-like protein 3 isoform X2
TrEMBLA0A0Q3EQ720.0A0A0Q3EQ72_BRADI; Uncharacterized protein
STRINGBRADI4G26520.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-55scarecrow-like 3