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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g26520.4.p | ||||||||
Common Name | BRADI_4g26520, LOC100835567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 371aa MW: 42593.7 Da PI: 6.7968 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 219.9 | 1.3e-67 | 56 | 367 | 110 | 374 |
GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rv 196 e v iiD++ s + QW+ +l+ + Rp+gpp+lR+T+v++ ++e l ++ L+k A +l +f+f+ v+ rle+l++++L ++ Bradi4g26520.4.p 56 EVVRIIDLSGSttHQWQWLKILHDFHGRPGGPPELRLTVVHE----DSEFLDYMQTLLSKQAGTLMPSFHFDK-VVGRLEALDFSNLreilKI 143 56789***8651155678999*********************....99*************************.7999****99998443355 PP GRAS 197 kpgEalaVnlvlqlhrll............................................desvsleserdevLklvkslsPkvvvvveqe 245 + gEa++++++lq+hrll + + ++++ ++L++v+ l+P++vv++eqe Bradi4g26520.4.p 144 NFGEAVVISCALQMHRLLavdddddasrdgiaqlqqmankahlkqmmmassprstlsypqtpSPQRQIPKLLVSFLSAVRALKPNIVVMMEQE 236 55*********************************************************988666677778889******************* PP GRAS 246 adhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 adhn++ F erf+e l+yy+alfdsl +a ++re++er+ vEr+ll++ei+n++ cega+r erhe+l++W++ ++++ F++vpls +a + Bradi4g26520.4.p 237 ADHNAPLFRERFAEMLRYYAALFDSLnAAAAGREDDERARVERVLLREEIKNMLVCEGAQRHERHEKLSQWEMHMNRCEFQSVPLSFDAIREG 329 **************************989999999********************************************************** PP GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 k + + ++ +ee+++ l+l W + L+svSaWr Bradi4g26520.4.p 330 KEKMMSSGlKECRGIEEDKHRLLLSWGETHLYSVSAWR 367 99999999888899***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.378 | 1 | 346 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-65 | 56 | 367 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MSIPYMRPGS HPQSRFMWAT TPSVHCNRAD ATTNLRDRLR ITISDLTDIY VDFFDEVVRI 60 IDLSGSTTHQ WQWLKILHDF HGRPGGPPEL RLTVVHEDSE FLDYMQTLLS KQAGTLMPSF 120 HFDKVVGRLE ALDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDDDDAS RDGIAQLQQM 180 ANKAHLKQMM MASSPRSTLS YPQTPSPQRQ IPKLLVSFLS AVRALKPNIV VMMEQEADHN 240 APLFRERFAE MLRYYAALFD SLNAAAAGRE DDERARVERV LLREEIKNML VCEGAQRHER 300 HEKLSQWEMH MNRCEFQSVP LSFDAIREGK EKMMSSGLKE CRGIEEDKHR LLLSWGETHL 360 YSVSAWRPRG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-21 | 55 | 369 | 126 | 380 | Protein SCARECROW |
5b3h_D | 3e-21 | 55 | 369 | 126 | 380 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g26520.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757751.1 | 0.0 | scarecrow-like protein 3 isoform X4 | ||||
TrEMBL | A0A0Q3IU63 | 0.0 | A0A0Q3IU63_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G26520.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 7e-41 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g26520.4.p |
Entrez Gene | 100835567 |