PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g25717.2.p
Common NameBRADI_4g25717
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 197aa    MW: 21328.8 Da    PI: 7.719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g25717.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.6e-1028692259
                      EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY 22 rsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                      r YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Bradi4g25717.2.p 28 RFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCN 69
                      88******99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.89E-92570IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-92770IPR003657WRKY domain
SMARTSM007741.5E-82770IPR003657WRKY domain
PfamPF031065.7E-122868IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MWMFLFREGG VDERSPKCVY CQHFCLIRFY YRCTYKNDMK CPATKQVQQK DTSDPPLFSV  60
TYFNHHTCNT TSRPIGSAPD TMEQPSSRKA VSICFGSSAA TEQLPAFLTP PSTAALHSPA  120
SRGNDPQDRG TYAPQFQWAD ASSSLSTGNA PVKMEADDHA GGAGSSSSSI TGGGGALSRT  180
LLPIGQSRCI EYFQFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g25717.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654262e-58EU665426.1 Triticum aestivum WRKY13 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024319235.11e-146uncharacterized protein LOC100822988 isoform X2
TrEMBLA0A0Q3H7U81e-145A0A0Q3H7U8_BRADI; Uncharacterized protein
STRINGBRADI4G25717.11e-121(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-10WRKY DNA-binding protein 46