PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g25022.5.p
Common NameBRADI_4g25022, LOC100835876
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 672aa    MW: 69697 Da    PI: 5.5927
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g25022.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093824191954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Bradi4g25022.5.p 382 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 419
                       554459******************************88 PP
2BELL110.59.6e-36238309172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       erqelq+kk kL+++l+eV++rY+qy+ q++ v ssFe  ag g+a+ YtslAl++iSr+FrcL+daia+qi
  Bradi4g25022.5.p 238 ERQELQMKKGKLVNMLDEVEQRYRQYHGQMRSVSSSFESLAGAGAARTYTSLALRTISRQFRCLRDAIAGQI 309
                       79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-54169307IPR006563POX domain
PfamPF075261.3E-47174306IPR006563POX domain
PROSITE profilePS5007112.26360423IPR001356Homeobox domain
CDDcd000864.80E-13363424No hitNo description
SMARTSM003899.7E-10363427IPR001356Homeobox domain
SuperFamilySSF466895.99E-17364429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-29366429IPR009057Homeodomain-like
PfamPF059202.6E-18380419IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAAYYHGGGT DIQAPGGGSD GGGGLQTLYL MNPSYGGGAS AGYSDAGAGA SMMLLNSAAA  60
MTPASSFGHH QASQQQHFVG IPLQQPPPAG SSYHSLWTTP ADMSSSSPPL TTTAAQGQGM  120
QQQQQHVSAV LSLSSSRARE APVTVAAVAG DEDDGRYSHL VAPGVMAPSS QGQVVMSSKY  180
LRAAQELLDE VVSVSKQGGI DDVDGKQEAA AKSVKKKEEE EGGEDAAGKS APEMSTAERQ  240
ELQMKKGKLV NMLDEVEQRY RQYHGQMRSV SSSFESLAGA GAARTYTSLA LRTISRQFRC  300
LRDAIAGQIR AASRALGEDL GDLSGGGGGR GSGVGSRLRY IDHQLRQQRA LQQLGMMQGS  360
SAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS NWFINARVRL  420
WKPMVEEMYL EETKEQQKQQ GGVNGDEAAA AAGGIRSGGA AGKGGGGEST ATPRPMGGGG  480
GFYDEVGDEE DEDGGVGEEE EEDGFRQGMF KKARAAAGDE PPAVQTFDVA ALHHAQAAAA  540
AAARQHEEQV SHRELLMKFM ESGGGNGAAA RDHQDGGAGY SLFAPGPYVG QFAGSDNPFA  600
FSGGGAHAGG GGGVSLTLGL PHGAGEQAPA PFLMGGGGNG ATDSGGGGAG YEMEMQSTKS  660
FAAQLMRDFV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-17369427563Homeobox protein Meis2
4xrm_B4e-17369427563Homeobox protein Meis2
5bng_A4e-17369427159Homeobox protein Meis2
5bng_B4e-17369427159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g25022.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546391e-178AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBankAK3550781e-178AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBankAK3665361e-178AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBankAK3743451e-178AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576293.10.0BEL1-like homeodomain protein 1
RefseqXP_010237922.10.0BEL1-like homeodomain protein 1
RefseqXP_010237923.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-102BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0Q3EST80.0A0A0Q3EST8_BRADI; Uncharacterized protein
STRINGBRADI4G25020.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-76BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]