PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g25022.4.p | ||||||||
Common Name | BRADI_4g25022, LOC100835876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 672aa MW: 69697 Da PI: 5.5927 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 382 | 419 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Bradi4g25022.4.p 382 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 419 554459******************************88 PP | |||||||
2 | BELL | 110.5 | 9.6e-36 | 238 | 309 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kL+++l+eV++rY+qy+ q++ v ssFe ag g+a+ YtslAl++iSr+FrcL+daia+qi Bradi4g25022.4.p 238 ERQELQMKKGKLVNMLDEVEQRYRQYHGQMRSVSSSFESLAGAGAARTYTSLALRTISRQFRCLRDAIAGQI 309 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.0E-54 | 169 | 307 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-47 | 174 | 306 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 360 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.80E-13 | 363 | 424 | No hit | No description |
SMART | SM00389 | 9.7E-10 | 363 | 427 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 364 | 429 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-29 | 366 | 429 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 380 | 419 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MAAYYHGGGT DIQAPGGGSD GGGGLQTLYL MNPSYGGGAS AGYSDAGAGA SMMLLNSAAA 60 MTPASSFGHH QASQQQHFVG IPLQQPPPAG SSYHSLWTTP ADMSSSSPPL TTTAAQGQGM 120 QQQQQHVSAV LSLSSSRARE APVTVAAVAG DEDDGRYSHL VAPGVMAPSS QGQVVMSSKY 180 LRAAQELLDE VVSVSKQGGI DDVDGKQEAA AKSVKKKEEE EGGEDAAGKS APEMSTAERQ 240 ELQMKKGKLV NMLDEVEQRY RQYHGQMRSV SSSFESLAGA GAARTYTSLA LRTISRQFRC 300 LRDAIAGQIR AASRALGEDL GDLSGGGGGR GSGVGSRLRY IDHQLRQQRA LQQLGMMQGS 360 SAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS NWFINARVRL 420 WKPMVEEMYL EETKEQQKQQ GGVNGDEAAA AAGGIRSGGA AGKGGGGEST ATPRPMGGGG 480 GFYDEVGDEE DEDGGVGEEE EEDGFRQGMF KKARAAAGDE PPAVQTFDVA ALHHAQAAAA 540 AAARQHEEQV SHRELLMKFM ESGGGNGAAA RDHQDGGAGY SLFAPGPYVG QFAGSDNPFA 600 FSGGGAHAGG GGGVSLTLGL PHGAGEQAPA PFLMGGGGNG ATDSGGGGAG YEMEMQSTKS 660 FAAQLMRDFV A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 4e-17 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-17 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 4e-17 | 369 | 427 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 4e-17 | 369 | 427 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g25022.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354639 | 1e-178 | AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02. | |||
GenBank | AK355078 | 1e-178 | AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22. | |||
GenBank | AK366536 | 1e-178 | AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18. | |||
GenBank | AK374345 | 1e-178 | AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576293.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_010237922.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_010237923.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-102 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0Q3EST8 | 0.0 | A0A0Q3EST8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G25020.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-76 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g25022.4.p |
Entrez Gene | 100835876 |
Publications ? help Back to Top | |||
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